This script streamlines the processing of '.fastq' files in bulk by utilizing the 'fastqc' tool, and organizing the output into a specifically designated folder named 'qc_reports_pretrim'. This facilitates efficient sequence data management and analysis for quality control processes.
The script will create a directory named qc_reports_pretrim in your current working directory and store all output files there.
Ensure that you have the necessary permissions to execute the script and write to the directory.
If you encounter permission issues, you might need to modify the script's permissions with chmod +x qc_reports.sh.
Contributions to improve the script are welcome. Please fork the repository and submit a pull request with your suggested changes.
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For support or to report issues, please contact 'atermos@asu.edu'.