fixed issue with automatic rarefaction depth

alk224 · Nov 1, 2015 · a00c329 · a00c329
1 parent 37545c1
commit a00c329
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cdiv_graphs_and_stats_workflow.sh b/cdiv_graphs_and_stats_workflow.sh
@@ -267,7 +267,7 @@ wait
 	if [[ $adepth =~ ^[0-9]+$ ]]; then
 	depth=($adepth)
 	else
-	depth=`grep -A 1 "Counts/sample detail" $biomdir/$biombase.summary | sed '/Counts/d' | cut -d" " -f3 | cut -d. -f1`
+	depth=`grep -A 1 "Counts/sample detail" $biomdir/$biombase.summary | sed '/Counts/d' | cut -d" " -f2 | cut -d. -f1`
 	fi
 
 	## Set output directory