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Robert Allaway allaway

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scientist at @Sage-Bionetworks

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Pinned

Sage-Bionetworks/polypharmacology-db Public

This app enables exploration of the Drug-Target Explorer database.

R 4 4
nf-osi/nf-hackathon-2019 Public

Guided data tour for the 2019 NF Hackathon in San Francisco, CA

Jupyter Notebook 2 4
jaybee84/ml-in-rd Public template

Manuscript for perspective on machine learning in rare disease

HTML 3 1
ra2-docker-demo Public

A demonstration of how to configure your docker container for running in the RA2 DREAM Challenge

R 2
nf-osi/nfportalutils Public

Convenience functions for NF Portal metadata.

R 1 2
nf-osi/nf-research-tools-schema Public

724 contributions in the last year

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Contribution activity

March 2023

Created 18 commits in 5 repositories

Created a pull request in nf-osi/nf-research-tools-schema that received 6 comments

Update nf_research_tools.rdb.model.csv

Follow up from our stand-up conversation today. The "disease" attributes have been changed to Genetic Disease, to more explicitly define what we ar…

+60 −42 • 6 comments

Opened 5 other pull requests in 4 repositories

nf-osi/NF_data_curator 2 merged

Update model source in config Mar 18
Update prod with new schema Mar 10

Sage-Bionetworks/scicomp-provisioner 1 merged

Add stanford bucket access Mar 24

Sage-Bionetworks/synapse-web-monorepo 1 merged

update version, change annotations Mar 13

nf-osi/nf-metadata-dictionary 1 merged

New metadata for Genetic Studies of Neurofibromatosis study Mar 7

Reviewed 6 pull requests in 3 repositories

nf-osi/nf-metadata-dictionary 4 pull requests

Patch/assay mapping Mar 21
Patch/assays Mar 17
Feat/registered schemas Mar 14
New metadata for Genetic Studies of Neurofibromatosis study Mar 7

nf-osi/jobs 1 pull request

Patch/new project Mar 22

nf-osi/NF_data_curator 1 pull request

Fix auth and templates Mar 14

Created an issue in Sage-Bionetworks/data_curator that received 2 comments

Detect manifests with large numbers of empty columns/rows prior to validation

Is your feature request related to a problem? Please describe. I recently uploaded a manifest that was provided by a community member. This manifes…

2 comments

Opened 6 other issues in 4 repositories

nf-osi/nf-metadata-dictionary 3 open

Add Cherry Imaging to platform Mar 24
Clarify Infinium MethylationEPIC 850k vs 935k Mar 7
data type required when not applicable Mar 7

nf-osi/nfportalutils 1 open

Refactor synapse-adjacent functions to use new reticulate-based synapser Mar 24

nf-osi/forms 1 open

Suggest archiving this repo (this is deprecated, if i understand correctly?) Mar 23

obi-ontology/obi 1 open

Possible to improve OBI_0002131? Mar 7

11 contributions in private repositories Mar 3 – Mar 24