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tensor_utils.py
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tensor_utils.py
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"""Functions used to manipulate pytorch tensors and numpy arrays."""
import numbers
import os
import tempfile
from collections import defaultdict
from typing import List, Dict, Optional, DefaultDict, Union, Any, cast
import PIL
import numpy as np
import torch
from PIL import Image
from moviepy import editor as mpy
from moviepy.editor import concatenate_videoclips
from tensorboardX import SummaryWriter as TBXSummaryWriter, summary as tbxsummary
from tensorboardX.proto.summary_pb2 import Summary as TBXSummary
# noinspection PyProtectedMember
from tensorboardX.utils import _prepare_video as tbx_prepare_video
from tensorboardX.x2num import make_np as tbxmake_np
from allenact.utils.system import get_logger
def to_device_recursively(
input: Any, device: Union[str, torch.device, int], inplace: bool = True
):
"""Recursively places tensors on the appropriate device."""
if input is None:
return input
elif isinstance(input, torch.Tensor):
return input.to(device) # type: ignore
elif isinstance(input, tuple):
return tuple(
to_device_recursively(input=subinput, device=device, inplace=inplace)
for subinput in input
)
elif isinstance(input, list):
if inplace:
for i in range(len(input)):
input[i] = to_device_recursively(
input=input[i], device=device, inplace=inplace
)
return input
else:
return [
to_device_recursively(input=subpart, device=device, inplace=inplace)
for subpart in input
]
elif isinstance(input, dict):
if inplace:
for key in input:
input[key] = to_device_recursively(
input=input[key], device=device, inplace=inplace
)
return input
else:
return {
k: to_device_recursively(input=input[k], device=device, inplace=inplace)
for k in input
}
elif isinstance(input, set):
if inplace:
for element in list(input):
input.remove(element)
input.add(
to_device_recursively(element, device=device, inplace=inplace)
)
else:
return set(
to_device_recursively(k, device=device, inplace=inplace) for k in input
)
elif isinstance(input, np.ndarray) or np.isscalar(input) or isinstance(input, str):
return input
elif hasattr(input, "to"):
# noinspection PyCallingNonCallable
return input.to(device=device, inplace=inplace)
else:
raise NotImplementedError(
"Sorry, value of type {} is not supported.".format(type(input))
)
def detach_recursively(input: Any, inplace=True):
"""Recursively detaches tensors in some data structure from their
computation graph."""
if input is None:
return input
elif isinstance(input, torch.Tensor):
return input.detach()
elif isinstance(input, tuple):
return tuple(
detach_recursively(input=subinput, inplace=inplace) for subinput in input
)
elif isinstance(input, list):
if inplace:
for i in range(len(input)):
input[i] = detach_recursively(input[i], inplace=inplace)
return input
else:
return [
detach_recursively(input=subinput, inplace=inplace)
for subinput in input
]
elif isinstance(input, dict):
if inplace:
for key in input:
input[key] = detach_recursively(input[key], inplace=inplace)
return input
else:
return {k: detach_recursively(input[k], inplace=inplace) for k in input}
elif isinstance(input, set):
if inplace:
for element in list(input):
input.remove(element)
input.add(detach_recursively(element, inplace=inplace))
else:
return set(detach_recursively(k, inplace=inplace) for k in input)
elif isinstance(input, np.ndarray) or np.isscalar(input) or isinstance(input, str):
return input
elif hasattr(input, "detach_recursively"):
# noinspection PyCallingNonCallable
return input.detach_recursively(inplace=inplace)
else:
raise NotImplementedError(
"Sorry, hidden state of type {} is not supported.".format(type(input))
)
def batch_observations(
observations: List[Dict], device: Optional[torch.device] = None
) -> Dict[str, Union[Dict, torch.Tensor]]:
"""Transpose a batch of observation dicts to a dict of batched
observations.
# Arguments
observations : List of dicts of observations.
device : The torch.device to put the resulting tensors on.
Will not move the tensors if None.
# Returns
Transposed dict of lists of observations.
"""
def dict_from_observation(
observation: Dict[str, Any]
) -> Dict[str, Union[Dict, List]]:
batch_dict: DefaultDict = defaultdict(list)
for sensor in observation:
if isinstance(observation[sensor], Dict):
batch_dict[sensor] = dict_from_observation(observation[sensor])
else:
batch_dict[sensor].append(to_tensor(observation[sensor]))
return batch_dict
def fill_dict_from_observations(
input_batch: Any, observation: Dict[str, Any]
) -> None:
for sensor in observation:
if isinstance(observation[sensor], Dict):
fill_dict_from_observations(input_batch[sensor], observation[sensor])
else:
input_batch[sensor].append(to_tensor(observation[sensor]))
def dict_to_batch(input_batch: Any) -> None:
for sensor in input_batch:
if isinstance(input_batch[sensor], Dict):
dict_to_batch(input_batch[sensor])
else:
input_batch[sensor] = torch.stack(
[batch.to(device=device) for batch in input_batch[sensor]], dim=0
)
if len(observations) == 0:
return cast(Dict[str, Union[Dict, torch.Tensor]], observations)
batch = dict_from_observation(observations[0])
for obs in observations[1:]:
fill_dict_from_observations(batch, obs)
dict_to_batch(batch)
return cast(Dict[str, Union[Dict, torch.Tensor]], batch)
def to_tensor(v) -> torch.Tensor:
"""Return a torch.Tensor version of the input.
# Parameters
v : Input values that can be coerced into being a tensor.
# Returns
A tensor version of the input.
"""
if torch.is_tensor(v):
return v
elif isinstance(v, np.ndarray):
return torch.from_numpy(v)
else:
return torch.tensor(
v, dtype=torch.int64 if isinstance(v, numbers.Integral) else torch.float
)
def tile_images(images: List[np.ndarray]) -> np.ndarray:
"""Tile multiple images into single image.
# Parameters
images : list of images where each image has dimension
(height x width x channels)
# Returns
Tiled image (new_height x width x channels).
"""
assert len(images) > 0, "empty list of images"
np_images = np.asarray(images)
n_images, height, width, n_channels = np_images.shape
new_height = int(np.ceil(np.sqrt(n_images)))
new_width = int(np.ceil(float(n_images) / new_height))
# pad with empty images to complete the rectangle
np_images = np.array(
images + [images[0] * 0 for _ in range(n_images, new_height * new_width)]
)
# img_HWhwc
out_image = np_images.reshape((new_height, new_width, height, width, n_channels))
# img_HhWwc
out_image = out_image.transpose(0, 2, 1, 3, 4)
# img_Hh_Ww_c
out_image = out_image.reshape((new_height * height, new_width * width, n_channels))
return out_image
class SummaryWriter(TBXSummaryWriter):
@staticmethod
def _video(tag, vid):
# noinspection PyProtectedMember
tag = tbxsummary._clean_tag(tag)
return TBXSummary(value=[TBXSummary.Value(tag=tag, image=vid)])
def add_vid(self, tag, vid, global_step=None, walltime=None):
self._get_file_writer().add_summary(
self._video(tag, vid), global_step, walltime
)
def add_image(
self, tag, img_tensor, global_step=None, walltime=None, dataformats="CHW"
):
self._get_file_writer().add_summary(
image(tag, img_tensor, dataformats=dataformats), global_step, walltime
)
def image(tag, tensor, rescale=1, dataformats="CHW"):
"""Outputs a `Summary` protocol buffer with images. The summary has up to
`max_images` summary values containing images. The images are built from
`tensor` which must be 3-D with shape `[height, width, channels]` and where
`channels` can be:
* 1: `tensor` is interpreted as Grayscale.
* 3: `tensor` is interpreted as RGB.
* 4: `tensor` is interpreted as RGBA.
# Parameters
tag: A name for the generated node. Will also serve as a series name in
TensorBoard.
tensor: A 3-D `uint8` or `float32` `Tensor` of shape `[height, width,
channels]` where `channels` is 1, 3, or 4.
'tensor' can either have values in [0, 1] (float32) or [0, 255] (uint8).
The image() function will scale the image values to [0, 255] by applying
a scale factor of either 1 (uint8) or 255 (float32).
rescale: The scale.
dataformats: Input image shape format.
# Returns
A scalar `Tensor` of type `string`. The serialized `Summary` protocol
buffer.
"""
# noinspection PyProtectedMember
tag = tbxsummary._clean_tag(tag)
tensor = tbxmake_np(tensor)
tensor = convert_to_HWC(tensor, dataformats)
# Do not assume that user passes in values in [0, 255], use data type to detect
if tensor.dtype != np.uint8:
tensor = (tensor * 255.0).astype(np.uint8)
image = tbxsummary.make_image(tensor, rescale=rescale)
return TBXSummary(value=[TBXSummary.Value(tag=tag, image=image)])
def convert_to_HWC(tensor, input_format): # tensor: numpy array
assert len(set(input_format)) == len(
input_format
), "You can not use the same dimension shordhand twice. \
input_format: {}".format(
input_format
)
assert len(tensor.shape) == len(
input_format
), "size of input tensor and input format are different. \
tensor shape: {}, input_format: {}".format(
tensor.shape, input_format
)
input_format = input_format.upper()
if len(input_format) == 4:
index = [input_format.find(c) for c in "NCHW"]
tensor_NCHW = tensor.transpose(index)
tensor_CHW = make_grid(tensor_NCHW)
# noinspection PyTypeChecker
return tensor_CHW.transpose(1, 2, 0)
if len(input_format) == 3:
index = [input_format.find(c) for c in "HWC"]
tensor_HWC = tensor.transpose(index)
if tensor_HWC.shape[2] == 1:
tensor_HWC = np.concatenate([tensor_HWC, tensor_HWC, tensor_HWC], 2)
return tensor_HWC
if len(input_format) == 2:
index = [input_format.find(c) for c in "HW"]
tensor = tensor.transpose(index)
tensor = np.stack([tensor, tensor, tensor], 2)
return tensor
def make_grid(I, ncols=8):
# I: N1HW or N3HW
assert isinstance(I, np.ndarray), "plugin error, should pass numpy array here"
if I.shape[1] == 1:
I = np.concatenate([I, I, I], 1)
assert I.ndim == 4 and I.shape[1] == 3 or I.shape[1] == 4
nimg = I.shape[0]
H = I.shape[2]
W = I.shape[3]
ncols = min(nimg, ncols)
nrows = int(np.ceil(float(nimg) / ncols))
canvas = np.zeros((I.shape[1], H * nrows, W * ncols), dtype=I.dtype)
i = 0
for y in range(nrows):
for x in range(ncols):
if i >= nimg:
break
canvas[:, y * H : (y + 1) * H, x * W : (x + 1) * W] = I[i]
i = i + 1
return canvas
def tensor_to_video(tensor, fps=4):
tensor = tbxmake_np(tensor)
tensor = tbx_prepare_video(tensor)
# If user passes in uint8, then we don't need to rescale by 255
if tensor.dtype != np.uint8:
tensor = (tensor * 255.0).astype(np.uint8)
return tbxsummary.make_video(tensor, fps)
def tensor_to_clip(tensor, fps=4):
tensor = tbxmake_np(tensor)
tensor = tbx_prepare_video(tensor)
# If user passes in uint8, then we don't need to rescale by 255
if tensor.dtype != np.uint8:
tensor = (tensor * 255.0).astype(np.uint8)
t, h, w, c = tensor.shape
clip = mpy.ImageSequenceClip(list(tensor), fps=fps)
return clip, (h, w, c)
def clips_to_video(clips, h, w, c):
# encode sequence of images into gif string
clip = concatenate_videoclips(clips)
filename = tempfile.NamedTemporaryFile(suffix=".gif", delete=False).name
# moviepy >= 1.0.0 use logger=None to suppress output.
try:
clip.write_gif(filename, verbose=False, logger=None)
except TypeError:
get_logger().warning(
"Upgrade to moviepy >= 1.0.0 to suppress the progress bar."
)
clip.write_gif(filename, verbose=False)
with open(filename, "rb") as f:
tensor_string = f.read()
try:
os.remove(filename)
except OSError:
get_logger().warning("The temporary file used by moviepy cannot be deleted.")
return TBXSummary.Image(
height=h, width=w, colorspace=c, encoded_image_string=tensor_string
)
def process_video(render, max_clip_len=500, max_video_len=-1, fps=4):
output = []
hwc = None
if len(render) > 0:
if len(render) > max_video_len > 0:
get_logger().warning(
"Clipping video to first {} frames out of {} original frames".format(
max_video_len, len(render)
)
)
render = render[:max_video_len]
for clipstart in range(0, len(render), max_clip_len):
clip = render[clipstart : clipstart + max_clip_len]
try:
current = np.stack(clip, axis=0) # T, H, W, C
current = current.transpose((0, 3, 1, 2)) # T, C, H, W
current = np.expand_dims(current, axis=0) # 1, T, C, H, W
current, cur_hwc = tensor_to_clip(current, fps=fps)
if hwc is None:
hwc = cur_hwc
else:
assert (
hwc == cur_hwc
), "Inconsistent clip shape: previous {} current {}".format(
hwc, cur_hwc
)
output.append(current)
except MemoryError:
get_logger().error(
"Skipping video due to memory error with clip of length {}".format(
len(clip)
)
)
return None
else:
get_logger().warning("Calling process_video with 0 frames")
return None
assert len(output) > 0, "No clips to concatenate"
assert hwc is not None, "No tensor dims assigned"
try:
result = clips_to_video(output, *hwc)
except MemoryError:
get_logger().error("Skipping video due to memory error calling clips_to_video")
result = None
return result
class ScaleBothSides(object):
"""Rescales the input PIL.Image to the given 'width' and `height`.
Attributes
width: new width
height: new height
interpolation: Default: PIL.Image.BILINEAR
"""
def __init__(self, width: int, height: int, interpolation=Image.BILINEAR):
self.width = width
self.height = height
self.interpolation = interpolation
def __call__(self, img: PIL.Image) -> PIL.Image:
return img.resize((self.width, self.height), self.interpolation)