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  • University of Washington/Fred Hutch
  • Seattle, WA

Pinned repositories

  1. blab/zika-usvi

    Evolutionary analysis of USVI Zika epidemic


  2. ihnv

    Code for sequences/evolutionary analysis of U genogroup IHNV

    Jupyter Notebook

  3. blab/zika-seq

    Pipelines to do MinION sequencing of Zika virus

    Python 9 1

  4. blab/roka

    Evolutionary and epidemiological analysis of Roka HIV outbreak

    Jupyter Notebook 1 2

  5. nextstrain/augur

    Pipeline components for real-time virus analysis

    Python 24 10

  6. nextstrain/fauna

    RethinkDB database to support real-time virus analysis

    Python 16 4

159 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Mon Wed Fri

Contribution activity

August 2018

Created an issue in blab/roka that received 2 comments

Clean up file paths in notebooks

It seems as though plotting notebooks might currently be referencing old file names for fasta inputs. This needs to be cleaned up for reproducibili…


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