This repository contains the frontend code for Mutfunc: SARS-CoV-2, which is a resource containing variant effect predictions and annotations for all possible SARS-CoV-2 amino acid substitutions. The pipeline and analysis code is in a separate repository. The dataset and methods are described in detail in the Mutfunc: SARS-CoV-2 preprint.
Alistair Dunham, Gwendolyn M Jang, Monita Muralidharan, Danielle Swaney & Pedro Beltrao. 2021. A missense variant effect prediction and annotation resource for SARS-CoV-2 (bioRxiv)
The site is made using create-react-app with Reactjs and Material UI. PV - Protein Viewer and React MSA Viewer are used to display proteins and sequences.
The project can be installed and run with the usual npm commands (npm install, npm start, npm run build, etc.).
The project uses three main branches:
- master - The most recent WIP updates and features
- dev - Version currently being run on the test server
- prod - Version currently on the live server