Update docker image

docker/Dockerfile

@@ -19,10 +19,11 @@ FROM debian:stable
 
 # Labels for the docker image
 LABEL 	maintainer="Pantelis Sopasakis <p.sopasakis@gmail.com>" \
-        license="MIT license" \
-        description="Jupyter notebook for Optimization Engine (OpEn)"
+    license="MIT license" \
+    description="Jupyter notebook for Optimization Engine (OpEn)"
 
 WORKDIR /open
+VOLUME /open
 
 # Example Python notebook
 COPY example.ipynb /open/
@@ -32,28 +33,29 @@ ENV PATH="/root/.cargo/bin:${PATH}"
 # These commands are groupped into a separate RUN to faciliate
 # caching; it is unlikely that any of the following will change
 # in future versions of this docker image
-RUN "sh" "-c" "echo nameserver 8.8.8.8 >> /etc/resolv.conf"  \
-    && apt-get update -y \
+RUN apt-get update -y \
     && apt-get -y --no-install-recommends install \
-        build-essential \
-        curl \
-        jupyter-notebook  \
-        python3 \
-        python3-pip \
-        python3-setuptools  \
-    &&  curl https://sh.rustup.rs -sSf | bash -s -- -y  \
-    &&  pip3 install wheel  \ 
-    &&  pip3 install opengen  \
-    &&  apt-get clean  \
-    &&  rm -rf /var/lib/apt/lists/*
+    build-essential \
+    curl \
+    jupyter-notebook  \
+    python3 \
+    python3-pip \
+    python3-setuptools  \
+    python3-venv \
+    && curl https://sh.rustup.rs -sSf | bash -s -- -y  \
+    && cd /; python3 -m venv venv \
+    && /bin/bash -c "source /venv/bin/activate && pip install wheel && pip install opengen && pip install jupyter" \
+    && apt-get clean  \
+    &&  rm -rf /var/lib/apt/lists/* \
+    && echo "source /venv/bin/activate" >> /root/.bashrc
 
+EXPOSE 8888
 
 # Run the following command every time this docker image
 # is executed
 COPY start_jupyter_notebook.sh /
 RUN ["chmod", "+x", "/start_jupyter_notebook.sh"]
-ENTRYPOINT ["/start_jupyter_notebook.sh"]
-CMD ["/start_jupyter_notebook.sh"]
+CMD ["/bin/bash", "/start_jupyter_notebook.sh"]
 
 
 
@@ -64,4 +66,5 @@ CMD ["/start_jupyter_notebook.sh"]
 #
 # from within the base directory of this project.
 #
+#
 # ------------------------------------------------------------------------------

docker/README.md

@@ -13,13 +13,57 @@ docker pull alphaville/open
 and then run it with
 
 ```console
-docker run -p 8888:8888 -it alphaville/open
+docker run --name open-jupyter -p 8888:8888 -it alphaville/open
+```
+
+Note that this will create a docker container with name `open-jupyter`. If you stop it, you can restart it with (don't do `docker run` again)
+
+```console
+docker start -ai open-jupyter
 ```
 
 ## What it does
 
 It starts a Jupyter Notebook at [localhost:8888](http://localhost:8888) without a password.
 
+## What's in the docker image?
+
+This docker image is build from `debian:stable` and contains:
+
+- A virtual environment (with Python 3)
+- Opengen [v0.8.0](https://github.com/alphaville/optimization-engine/releases/tag/opengen-0.8.0)
+- The [latest version](https://crates.io/crates/optimization_engine) of the OpEn rust solver is installed automatically
+- Jupyter notebook (runs automatically when the image runs)
+
+
+## How to open a terminal into the docker image
+
+Just 
+
+```console
+docker exec -it open-jupyter bash
+```
+
+This will open a bash shell to the docker image with name `open-jupyter`; this is the name we specified above when we ran the image (using `--name open-jupyter`). In this bash shell, the virtual environment on which the Jupyter notebook is running is enabled by default. 
+
+
+### How to run with specified volume
+
+Firstly, you need to create a volume. You only need to do this once (unless you want to create different volumes). As an example, let us create a docker volume with name `OpEnVolume`:
+
+```console
+docker volume create OpEnVolume
+```
+
+Next, let us run the image `alphaville/open:0.5.0` with the above volume:
+
+```console
+docker run --name open-jupyter \
+           --mount source=OpEnVolume,destination=/open \
+           -p 8888:8888 \
+           -it alphaville/open:0.5.0
+```
+
 ## Set a password
 
 To set up a password for your Python Notebook:
@@ -33,7 +77,7 @@ docker run -e JUPYTER_NOTEBOOK_PASSWORD=... -p 8888:8888 -it alphaville/open
 
 For example, let's say you want to set the password **open**. Then do
 
-```
+```console
 docker run   \
   -e JUPYTER_NOTEBOOK_PASSWORD=sha1:898ca689bf37:2ee883bfd6ffe82a749a86e37964700bd06a2ff9  \
   -p 8888:8888 -it alphaville/open

docker/start_jupyter_notebook.sh

@@ -6,13 +6,13 @@ if [ -z "$JUPYTER_NOTEBOOK_PASSWORD" ]
 then
       echo "No Jupyter Notebook password provided - starting in unsafe mode"
       echo "Set password using -e JUPYTER_NOTEBOOK_PASSWORD={sha of password}"
-      jupyter notebook  \
+      /venv/bin/jupyter notebook  \
           --port=8888 --no-browser  \
           --ip=0.0.0.0 --allow-root  \
           --NotebookApp.password='' --NotebookApp.token=''
 else
       echo "Jupyter Notebook password provided by user"
-      jupyter notebook  \
+      /venv/bin/jupyter notebook  \
           --port=8888 --no-browser  \
           --ip=0.0.0.0 --allow-root  \
           --NotebookApp.password=$JUPYTER_NOTEBOOK_PASSWORD