Add ScoringMatrix::score_into
method
#113
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name: Rust | |
on: | |
- push | |
- pull_request | |
jobs: | |
lint: | |
name: Lint | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Rust stable | |
uses: dtolnay/rust-toolchain@stable | |
with: | |
components: rustfmt | |
- name: Check code format | |
run: cargo fmt --all -- --check | |
check: | |
name: Check (${{ matrix.rust-toolchain }}, ${{ matrix.target }}) | |
runs-on: ubuntu-latest | |
needs: lint | |
strategy: | |
matrix: | |
rust-toolchain: | |
- stable | |
- beta | |
- nightly | |
target: | |
- "x86_64-unknown-linux-gnu" | |
- "aarch64-unknown-linux-gnu" | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Rust ${{ matrix.rust-toolchain }} | |
uses: dtolnay/rust-toolchain@master | |
with: | |
toolchain: ${{ matrix.rust-toolchain }} | |
- name: Setup cache for cargo | |
uses: actions/cache@v3 | |
with: | |
path: target | |
key: ${{ runner.os }}-cargo-${{ matrix.rust-toolchain }} | |
- name: Install cross-compilation target | |
run: rustup target add ${{ matrix.target }} | |
- name: Check code | |
run: cargo check --target ${{ matrix.target }} | |
env: | |
PYO3_CROSS_PYTHON_VERSION: "3.11" | |
test: | |
name: Test (${{ matrix.rust-toolchain }}, ${{ matrix.cpu }}) | |
runs-on: ubuntu-latest | |
needs: check | |
strategy: | |
matrix: | |
rust-toolchain: | |
- stable | |
- beta | |
- nightly | |
cpu: | |
- "native" | |
- "x86-64" | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Rust ${{ matrix.rust-toolchain }} | |
uses: dtolnay/rust-toolchain@master | |
with: | |
toolchain: ${{ matrix.rust-toolchain }} | |
- name: Setup cache for cargo | |
uses: actions/cache@v3 | |
with: | |
path: target | |
key: ${{ runner.os }}-cargo-${{ matrix.rust-toolchain }} | |
- name: Test code | |
run: cargo test | |
cover: | |
name: Coverage (${{ matrix.cpu }}) | |
runs-on: ubuntu-latest | |
needs: test | |
if: "!startsWith(github.ref, 'refs/tags/v')" | |
strategy: | |
matrix: | |
cpu: | |
- "native" | |
- "x86-64" | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Rust stable | |
uses: dtolnay/rust-toolchain@stable | |
- name: Setup cache for cargo | |
uses: actions/cache@v3 | |
with: | |
path: target | |
key: ${{ runner.os }}-cargo-${{ matrix.rust-toolchain }} | |
- name: Measure code coverage on CPU ${{ matrix.cpu }} | |
uses: actions-rs/tarpaulin@v0.1 | |
with: | |
env: RUSTFLAGS="--target-cpu=${{ matrix.cpu }}" | |
version: '0.19.0' | |
args: '-v --out Xml --ciserver github-actions' | |
- name: Upload to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
flags: ${{ matrix.cpu }} | |
env_vars: OS | |
name: test-${{ matrix.cpu }} | |
fail_ci_if_error: false | |
token: ${{ secrets.CODECOV_TOKEN }} | |
codecov_curl_args: "--globoff" | |
verbose: true | |
publish: | |
needs: test | |
runs-on: ubuntu-latest | |
if: "startsWith(github.ref, 'refs/tags/v')" | |
environment: Crates.io | |
name: Publish crates | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Setup Rust ${{ matrix.rust-toolchain }} | |
uses: dtolnay/rust-toolchain@stable | |
- name: Package and publish lightmotif | |
run: cargo publish -p lightmotif --token ${{ secrets.CRATES_IO_TOKEN }} | |
- name: Package and publish lightmotif-io | |
run: cargo publish -p lightmotif-io --token ${{ secrets.CRATES_IO_TOKEN }} | |
- name: Package and publish lightmotif-transfac | |
run: cargo publish -p lightmotif-transfac --token ${{ secrets.CRATES_IO_TOKEN }} | |
- name: Package and publish lightmotif-tfmpvalue | |
run: cargo publish -p lightmotif-tfmpvalue --token ${{ secrets.CRATES_IO_TOKEN }} | |
- name: Package and publish lightmotif-py | |
run: cargo publish -p lightmotif-py --token ${{ secrets.CRATES_IO_TOKEN }} | |
release: | |
environment: GitHub Releases | |
runs-on: ubuntu-latest | |
if: "startsWith(github.ref, 'refs/tags/v')" | |
name: Release | |
needs: publish | |
permissions: | |
contents: write | |
pull-requests: read | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Release a Changelog | |
uses: rasmus-saks/release-a-changelog-action@v1.0.1 | |
with: | |
github-token: '${{ secrets.GITHUB_TOKEN }}' |