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AttributeError: module 'fastobo.typedef' has no attribute 'IsClassLevel' when saving obo file #178

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cmungall opened this issue Jun 23, 2022 · 1 comment · Fixed by INCATools/ontology-access-kit#188
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AttributeError: module 'fastobo.typedef' has no attribute 'IsClassLevel' when saving obo file #178

cmungall opened this issue Jun 23, 2022 · 1 comment · Fixed by INCATools/ontology-access-kit#188
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bug Issues or pull requests that specify a bug. fixed Issues which bug was fixed in subsequent commits.

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@cmungall
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See #175 for code that will reproduce

this ontology:

format-version: 1.4
ontology: test

[Typedef]
id: q
name: q
is_class_level: true

results in:

  File "/Users/cjm/Library/Caches/pypoetry/virtualenvs/oaklib-OeQZizwE-py3.9/lib/python3.9/site-packages/pronto/ontology.py", line 405, in dump
    cls(self).dump(file)  # type: ignore
  File "/Users/cjm/Library/Caches/pypoetry/virtualenvs/oaklib-OeQZizwE-py3.9/lib/python3.9/site-packages/pronto/serializers/obo.py", line 37, in dump
    frame = self._to_typedef_frame(Relationship(self.ont, data))
  File "/Users/cjm/Library/Caches/pypoetry/virtualenvs/oaklib-OeQZizwE-py3.9/lib/python3.9/site-packages/pronto/serializers/_fastobo.py", line 282, in _to_typedef_frame
    frame.append(fastobo.typedef.IsClassLevel(True))
AttributeError: module 'fastobo.typedef' has no attribute 'IsClassLevel'
althonos added a commit that referenced this issue Jun 28, 2022
@althonos
Fix serialization of class-level relationships (#178)
b6cb003
@althonos
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Fixed in v2.4.7, thanks for the report!

@althonos althonos added bug Issues or pull requests that specify a bug. fixed Issues which bug was fixed in subsequent commits. labels Jun 28, 2022
cmungall added a commit to INCATools/ontology-access-kit that referenced this issue Jul 16, 2022
@cmungall
Bumping pronto version to 2.5.0.
07ad0d5 
Using latest pronto which fixes althonos/pronto#178,
this allows more ontologies to be dumped as obo
@cmungall cmungall mentioned this issue Jul 16, 2022
Merged
cmungall added a commit to INCATools/ontology-access-kit that referenced this issue Jul 18, 2022
@cmungall
Bumping pronto version to 2.5.0. (#188)
4ec677a 
Using latest pronto which fixes althonos/pronto#178,
this allows more ontologies to be dumped as obo
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Bumping pronto version to 2.5.0. INCATools/ontology-access-kit
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@cmungall @althonos