PredictMD-docker: Docker and Singularity images for PredictMD

This repository contains scripts for creating Docker images and Singularity images for PredictMD.

Recommended image

Name	Dockerfile	Image
dilumaluthge/predictmd	Dockerfile.template

Instructions for use

Download and start the container by running the following line:

docker run --name predictmd -it dilumaluthge/predictmd /bin/bash

Once you are inside the container, you can start Julia by running the following line:

julia

In Julia, run the following line to load PredictMD:

import PredictMDFull

You can run the test suite by running the following four lines in Julia:

import Pkg
Pkg.test("PredictMDExtra")
Pkg.test("PredictMDFull")
Pkg.test("PredictMD")

After you have exited the container, you can return to it by running the following line:

docker start -ai predictmd

To delete your container, run the following line:

docker container rm -f predictmd

To also delete the downloaded image, run the following line:

docker image rm -f dilumaluthge/predictmd