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Error during docker-compose up -d superset #7

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Tuckie opened this issue Feb 9, 2017 · 1 comment
Closed

Error during docker-compose up -d superset #7

Tuckie opened this issue Feb 9, 2017 · 1 comment

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@Tuckie
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Tuckie commented Feb 9, 2017

When working through the install, I get the error FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-lg8ohxhc-uninstall/usr/lib/python3.5/site-packages/dateutil/__init__.py'

More info:

docker-compose up -d superset
Building superset
Step 1/12 : FROM amancevice/pandas:0.18.1-python3
 ---> 33d75b90e290
Step 2/12 : ENV SUPERSET_VERSION 0.15.4
 ---> Using cache
 ---> a0dfd18a808d
Step 3/12 : RUN apk add --no-cache         curl         libffi-dev         cyrus-sasl-dev         mariadb-dev         postgresql-dev &&     pip3 install         superset==$SUPERSET_VERSION         mysqlclient==1.3.7         ldap3==2.1.1         psycopg2==2.6.1         redis==2.10.5         sqlalchemy-redshift==0.5.0
 ---> Running in aaf2c3f1ce4a
fetch http://dl-cdn.alpinelinux.org/alpine/v3.4/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.4/community/x86_64/APKINDEX.tar.gz
(1/21) Upgrading libcrypto1.0 (1.0.2j-r0 -> 1.0.2k-r0)
(2/21) Upgrading libssl1.0 (1.0.2j-r0 -> 1.0.2k-r0)
(3/21) Installing ca-certificates (20161130-r0)
(4/21) Installing libssh2 (1.7.0-r0)
(5/21) Installing libcurl (7.52.1-r0)
(6/21) Installing curl (7.52.1-r0)
(7/21) Installing db (5.3.28-r0)
(8/21) Installing libsasl (2.1.26-r7)
(9/21) Installing cyrus-sasl-dev (2.1.26-r7)
(10/21) Installing libffi-dev (3.2.1-r2)
(11/21) Installing zlib-dev (1.2.8-r2)
(12/21) Installing openssl-dev (1.0.2k-r0)
^[[6~^[[6~(13/21) Installing mariadb-common (10.1.21-r0)
(14/21) Installing mariadb-client-libs (10.1.21-r0)
(15/21) Installing libaio (0.3.110-r0)
(16/21) Installing mariadb-libs (10.1.21-r0)
(17/21) Installing mariadb-dev (10.1.21-r0)
(18/21) Installing libldap (2.4.44-r1)
(19/21) Installing libpq (9.5.4-r0)
(20/21) Installing postgresql-libs (9.5.4-r0)
(21/21) Installing postgresql-dev (9.5.4-r0)
Executing busybox-1.24.2-r11.trigger
Executing ca-certificates-20161130-r0.trigger
OK: 491 MiB in 58 packages
Collecting superset==0.15.4
  Downloading superset-0.15.4.tar.gz (32.4MB)
Collecting mysqlclient==1.3.7
  Downloading mysqlclient-1.3.7.tar.gz (79kB)
Collecting ldap3==2.1.1
  Downloading ldap3-2.1.1-py2.py3-none-any.whl (352kB)
Collecting psycopg2==2.6.1
  Downloading psycopg2-2.6.1.tar.gz (371kB)
Collecting redis==2.10.5
  Downloading redis-2.10.5-py2.py3-none-any.whl (60kB)
Collecting sqlalchemy-redshift==0.5.0
  Downloading sqlalchemy_redshift-0.5.0-py2.py3-none-any.whl
Collecting celery==3.1.23 (from superset==0.15.4)
  Downloading celery-3.1.23-py2.py3-none-any.whl (520kB)
Collecting cryptography==1.5.3 (from superset==0.15.4)
  Downloading cryptography-1.5.3.tar.gz (400kB)
Collecting flask-appbuilder==1.8.1 (from superset==0.15.4)
  Downloading Flask-AppBuilder-1.8.1.tar.gz (1.1MB)
Collecting flask-cache==0.13.1 (from superset==0.15.4)
  Downloading Flask-Cache-0.13.1.tar.gz (45kB)
Collecting flask-migrate==1.5.1 (from superset==0.15.4)
  Downloading Flask-Migrate-1.5.1.tar.gz
Collecting flask-script==2.0.5 (from superset==0.15.4)
  Downloading Flask-Script-2.0.5.tar.gz (42kB)
Collecting flask-testing==0.5.0 (from superset==0.15.4)
  Downloading Flask-Testing-0.5.0.tar.gz (40kB)
Collecting flask-sqlalchemy==2.0 (from superset==0.15.4)
  Downloading Flask-SQLAlchemy-2.0.tar.gz (93kB)
Collecting humanize==0.5.1 (from superset==0.15.4)
  Downloading humanize-0.5.1.tar.gz
Collecting gunicorn==19.6.0 (from superset==0.15.4)
  Downloading gunicorn-19.6.0-py2.py3-none-any.whl (114kB)
Collecting markdown==2.6.6 (from superset==0.15.4)
  Downloading Markdown-2.6.6.zip (412kB)
Requirement already satisfied (use --upgrade to upgrade): pandas==0.18.1 in /usr/lib/python3.5/site-packages (from superset==0.15.4)
Collecting parsedatetime==2.0.0 (from superset==0.15.4)
  Downloading parsedatetime-2.0.tar.gz (56kB)
Collecting pydruid==0.3.1 (from superset==0.15.4)
  Downloading pydruid-0.3.1-py2.py3-none-any.whl
Collecting PyHive>=0.2.1 (from superset==0.15.4)
  Downloading PyHive-0.2.1.tar.gz (42kB)
Collecting python-dateutil==2.5.3 (from superset==0.15.4)
  Downloading python_dateutil-2.5.3-py2.py3-none-any.whl (201kB)
Collecting requests==2.10.0 (from superset==0.15.4)
  Downloading requests-2.10.0-py2.py3-none-any.whl (506kB)
Collecting simplejson==3.8.2 (from superset==0.15.4)
  Downloading simplejson-3.8.2.tar.gz (76kB)
Requirement already satisfied (use --upgrade to upgrade): six==1.10.0 in /usr/lib/python3.5/site-packages (from superset==0.15.4)
Collecting sqlalchemy==1.0.13 (from superset==0.15.4)
  Downloading SQLAlchemy-1.0.13.tar.gz (4.8MB)
Collecting sqlalchemy-utils==0.32.7 (from superset==0.15.4)
  Downloading SQLAlchemy-Utils-0.32.7.tar.gz (116kB)
Collecting sqlparse==0.1.19 (from superset==0.15.4)
  Downloading sqlparse-0.1.19.tar.gz (58kB)
Collecting thrift>=0.9.3 (from superset==0.15.4)
  Downloading thrift-0.10.0.zip (87kB)
Collecting thrift-sasl>=0.2.1 (from superset==0.15.4)
  Downloading thrift_sasl-0.2.1.tar.gz
Collecting werkzeug==0.11.10 (from superset==0.15.4)
  Downloading Werkzeug-0.11.10-py2.py3-none-any.whl (306kB)
Collecting pyasn1>=0.1.8 (from ldap3==2.1.1)
  Downloading pyasn1-0.2.2-py2.py3-none-any.whl (51kB)
Collecting billiard<3.4,>=3.3.0.23 (from celery==3.1.23->superset==0.15.4)
  Downloading billiard-3.3.0.23.tar.gz (151kB)
Requirement already satisfied (use --upgrade to upgrade): pytz>dev in /usr/lib/python3.5/site-packages (from celery==3.1.23->superset==0.15.4)
Collecting kombu<3.1,>=3.0.34 (from celery==3.1.23->superset==0.15.4)
  Downloading kombu-3.0.37-py2.py3-none-any.whl (240kB)
Collecting idna>=2.0 (from cryptography==1.5.3->superset==0.15.4)
  Downloading idna-2.2-py2.py3-none-any.whl (55kB)
Requirement already satisfied (use --upgrade to upgrade): setuptools>=11.3 in /usr/lib/python3.5/site-packages (from cryptography==1.5.3->superset==0.15.4)
Collecting cffi>=1.4.1 (from cryptography==1.5.3->superset==0.15.4)
  Downloading cffi-1.9.1.tar.gz (407kB)
Collecting colorama>=0.3 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading colorama-0.3.7-py2.py3-none-any.whl
Collecting click>=3.0 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading click-6.7-py2.py3-none-any.whl (71kB)
Collecting Flask>=0.10 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Flask-0.12-py2.py3-none-any.whl (82kB)
Collecting Flask-Babel>=0.10.0 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Flask-Babel-0.11.1.tar.gz (40kB)
Collecting Flask-Login==0.2.11 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Flask-Login-0.2.11.tar.gz
Collecting Flask-OpenID>=1.1.0 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Flask-OpenID-1.2.5.tar.gz (43kB)
Collecting Flask-WTF>=0.9.1 (from flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Flask_WTF-0.14.2-py2.py3-none-any.whl
Collecting alembic>=0.6 (from flask-migrate==1.5.1->superset==0.15.4)
  Downloading alembic-0.8.10.tar.gz (976kB)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7.0 in /usr/lib/python3.5/site-packages (from pandas==0.18.1->superset==0.15.4)
Collecting future (from PyHive>=0.2.1->superset==0.15.4)
  Downloading future-0.16.0.tar.gz (824kB)
Collecting sasl>=0.2.1 (from thrift-sasl>=0.2.1->superset==0.15.4)
  Downloading sasl-0.2.1.tar.gz
Collecting thriftpy (from thrift-sasl>=0.2.1->superset==0.15.4)
  Downloading thriftpy-0.3.9.tar.gz (208kB)
Collecting anyjson>=0.3.3 (from kombu<3.1,>=3.0.34->celery==3.1.23->superset==0.15.4)
  Downloading anyjson-0.3.3.tar.gz
Collecting amqp<2.0,>=1.4.9 (from kombu<3.1,>=3.0.34->celery==3.1.23->superset==0.15.4)
  Downloading amqp-1.4.9-py2.py3-none-any.whl (51kB)
Collecting pycparser (from cffi>=1.4.1->cryptography==1.5.3->superset==0.15.4)
  Downloading pycparser-2.17.tar.gz (231kB)
Collecting Jinja2>=2.4 (from Flask>=0.10->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Jinja2-2.9.5-py2.py3-none-any.whl (340kB)
Collecting itsdangerous>=0.21 (from Flask>=0.10->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading itsdangerous-0.24.tar.gz (46kB)
Collecting Babel>=2.3 (from Flask-Babel>=0.10.0->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading Babel-2.3.4-py2.py3-none-any.whl (7.1MB)
Collecting python3-openid>=2.0 (from Flask-OpenID>=1.1.0->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading python3-openid-3.0.10.zip (365kB)
Collecting WTForms (from Flask-WTF>=0.9.1->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading WTForms-2.1.zip (553kB)
Collecting Mako (from alembic>=0.6->flask-migrate==1.5.1->superset==0.15.4)
  Downloading Mako-1.0.6.tar.gz (575kB)
Collecting python-editor>=0.3 (from alembic>=0.6->flask-migrate==1.5.1->superset==0.15.4)
  Downloading python-editor-1.0.3.tar.gz
Collecting ply<4.0,>=3.4 (from thriftpy->thrift-sasl>=0.2.1->superset==0.15.4)
  Downloading ply-3.10.tar.gz (150kB)
Collecting MarkupSafe>=0.23 (from Jinja2>=2.4->Flask>=0.10->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading MarkupSafe-0.23.tar.gz
Collecting defusedxml (from python3-openid>=2.0->Flask-OpenID>=1.1.0->flask-appbuilder==1.8.1->superset==0.15.4)
  Downloading defusedxml-0.5.0-py2.py3-none-any.whl
Installing collected packages: billiard, anyjson, amqp, kombu, celery, idna, pyasn1, pycparser, cffi, cryptography, colorama, click, MarkupSafe, Jinja2, itsdangerous, werkzeug, Flask, Babel, Flask-Babel, Flask-Login, defusedxml, python3-openid, Flask-OpenID, sqlalchemy, flask-sqlalchemy, WTForms, Flask-WTF, flask-appbuilder, flask-cache, Mako, python-editor, alembic, flask-script, flask-migrate, flask-testing, humanize, gunicorn, markdown, parsedatetime, pydruid, future, PyHive, python-dateutil, requests, simplejson, sqlalchemy-utils, sqlparse, thrift, sasl, ply, thriftpy, thrift-sasl, superset, mysqlclient, ldap3, psycopg2, redis, sqlalchemy-redshift
  Running setup.py install for billiard: started
    Running setup.py install for billiard: finished with status 'done'
  Running setup.py install for anyjson: started
    Running setup.py install for anyjson: finished with status 'done'
  Running setup.py install for pycparser: started
    Running setup.py install for pycparser: finished with status 'done'
  Running setup.py install for cffi: started
    Running setup.py install for cffi: finished with status 'done'
  Running setup.py install for cryptography: started
    Running setup.py install for cryptography: finished with status 'done'
  Running setup.py install for MarkupSafe: started
    Running setup.py install for MarkupSafe: finished with status 'done'
  Running setup.py install for itsdangerous: started
    Running setup.py install for itsdangerous: finished with status 'done'
  Running setup.py install for Flask-Babel: started
    Running setup.py install for Flask-Babel: finished with status 'done'
  Running setup.py install for Flask-Login: started
    Running setup.py install for Flask-Login: finished with status 'done'
  Running setup.py install for python3-openid: started
    Running setup.py install for python3-openid: finished with status 'done'
  Running setup.py install for Flask-OpenID: started
    Running setup.py install for Flask-OpenID: finished with status 'done'
  Running setup.py install for sqlalchemy: started
    Running setup.py install for sqlalchemy: finished with status 'done'
  Running setup.py install for flask-sqlalchemy: started
    Running setup.py install for flask-sqlalchemy: finished with status 'done'
  Running setup.py install for WTForms: started
    Running setup.py install for WTForms: finished with status 'done'
  Running setup.py install for flask-appbuilder: started
    Running setup.py install for flask-appbuilder: finished with status 'done'
  Running setup.py install for flask-cache: started
    Running setup.py install for flask-cache: finished with status 'done'
  Running setup.py install for Mako: started
    Running setup.py install for Mako: finished with status 'done'
  Running setup.py install for python-editor: started
    Running setup.py install for python-editor: finished with status 'done'
  Running setup.py install for alembic: started
    Running setup.py install for alembic: finished with status 'done'
  Running setup.py install for flask-script: started
    Running setup.py install for flask-script: finished with status 'done'
  Running setup.py install for flask-migrate: started
    Running setup.py install for flask-migrate: finished with status 'done'
  Running setup.py install for flask-testing: started
    Running setup.py install for flask-testing: finished with status 'done'
  Running setup.py install for humanize: started
    Running setup.py install for humanize: finished with status 'done'
  Running setup.py install for markdown: started
    Running setup.py install for markdown: finished with status 'done'
  Running setup.py install for parsedatetime: started
    Running setup.py install for parsedatetime: finished with status 'done'
  Running setup.py install for future: started
    Running setup.py install for future: finished with status 'done'
  Running setup.py install for PyHive: started
    Running setup.py install for PyHive: finished with status 'done'
  Found existing installation: python-dateutil 2.6.0
    Uninstalling python-dateutil-2.6.0:
      Successfully uninstalled python-dateutil-2.6.0
Exception:
Traceback (most recent call last):
  File "/usr/lib/python3.5/shutil.py", line 430, in _rmtree_safe_fd
    os.unlink(name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '__init__.py'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3.5/site-packages/pip/basecommand.py", line 209, in main
    status = self.run(options, args)
  File "/usr/lib/python3.5/site-packages/pip/commands/install.py", line 317, in run
    prefix=options.prefix_path,
  File "/usr/lib/python3.5/site-packages/pip/req/req_set.py", line 743, in install
    requirement.commit_uninstall()
  File "/usr/lib/python3.5/site-packages/pip/req/req_install.py", line 759, in commit_uninstall
    self.uninstalled.commit()
  File "/usr/lib/python3.5/site-packages/pip/req/req_uninstall.py", line 142, in commit
    rmtree(self.save_dir)
  File "/usr/lib/python3.5/site-packages/pip/_vendor/retrying.py", line 49, in wrapped_f
    return Retrying(*dargs, **dkw).call(f, *args, **kw)
  File "/usr/lib/python3.5/site-packages/pip/_vendor/retrying.py", line 212, in call
    raise attempt.get()
  File "/usr/lib/python3.5/site-packages/pip/_vendor/retrying.py", line 247, in get
    six.reraise(self.value[0], self.value[1], self.value[2])
  File "/usr/lib/python3.5/site-packages/pip/_vendor/six.py", line 686, in reraise
    raise value
  File "/usr/lib/python3.5/site-packages/pip/_vendor/retrying.py", line 200, in call
    attempt = Attempt(fn(*args, **kwargs), attempt_number, False)
  File "/usr/lib/python3.5/site-packages/pip/utils/__init__.py", line 102, in rmtree
    onerror=rmtree_errorhandler)
  File "/usr/lib/python3.5/shutil.py", line 474, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/lib/python3.5/shutil.py", line 412, in _rmtree_safe_fd
    _rmtree_safe_fd(dirfd, fullname, onerror)
  File "/usr/lib/python3.5/shutil.py", line 412, in _rmtree_safe_fd
    _rmtree_safe_fd(dirfd, fullname, onerror)
  File "/usr/lib/python3.5/shutil.py", line 412, in _rmtree_safe_fd
    _rmtree_safe_fd(dirfd, fullname, onerror)
  File "/usr/lib/python3.5/shutil.py", line 412, in _rmtree_safe_fd
    _rmtree_safe_fd(dirfd, fullname, onerror)
  File "/usr/lib/python3.5/shutil.py", line 412, in _rmtree_safe_fd
    _rmtree_safe_fd(dirfd, fullname, onerror)
  File "/usr/lib/python3.5/shutil.py", line 432, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/lib/python3.5/site-packages/pip/utils/__init__.py", line 110, in rmtree_errorhandler
    if os.stat(path).st_mode & stat.S_IREAD:
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-lg8ohxhc-uninstall/usr/lib/python3.5/site-packages/dateutil/__init__.py'
You are using pip version 8.1.1, however version 9.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
ERROR: Service 'superset' failed to build: The command '/bin/sh -c apk add --no-cache         curl         libffi-dev         cyrus-sasl-dev         mariadb-dev         postgresql-dev &&     pip3 install         superset==$SUPERSET_VERSION         mysqlclient==1.3.7         ldap3==2.1.1         psycopg2==2.6.1         redis==2.10.5         sqlalchemy-redshift==0.5.0' returned a non-zero code: 2
@Tuckie
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Tuckie commented Feb 13, 2017

And it appears to work just fine after an update to CentOS. Closing!

@Tuckie Tuckie closed this as completed Feb 13, 2017
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@Tuckie