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Metagenomic_scripts

Copyright © 2023 Adrian M.S, M.Sc.

Repository of various scripts and snippets of code used mostly for bioinformatic research.

From schoolwork, to my M.Sc. and bioinformatics jobs.

Different stuff

R code use in amplicon analysis (DADA2, Graphs, ordination analyses and more) : Amplicon 16s rRNA

Using GraftM for homolog searching and marker gene identification in WMS samples: GraftM

Misc bash code used for various purposes: bash

Using R to make maps: mapsR

Qiime2 pipeline and extras : QIIME2

Squeezmeta and SQMtools scripts:

Analyzing SNPs data:

Python and Biopython snippets:

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Repository for various scripts in metagenomics

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