chart_specifications object not found

[steve-kasica]

Hey Ana,

I'm trying to download MinCombinR, but running into some install trouble:

> devtools::install_github('swkasica/minCombinR')
Downloading GitHub repo swkasica/minCombinR@master
Skipping 2 packages not available: ggtree, treeio
√  checking for file 'C:\Users\steph\AppData\Local\Temp\RtmpGgz05f\remotes19c8f3dbf\swkasica-minCombinR-2c85505/DESCRIPTION' ... 
-  preparing 'mincombinr':
√  checking DESCRIPTION meta-information ... 
-  checking for LF line-endings in source and make files and shell scripts
-  checking for empty or unneeded directories
-  looking to see if a 'data/datalist' file should be added
-  building 'mincombinr_0.1.0.tar.gz'
   
Installing package into ‘C:/Users/steph/R/R-3.5.2/library’
(as ‘lib’ is unspecified)
* installing *source* package 'mincombinr' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Error in unique(chart_specifications$chart_type) : 
  object 'chart_specifications' not found
Error : unable to load R code in package 'mincombinr'
ERROR: lazy loading failed for package 'mincombinr'
* removing 'C:/Users/steph/R/R-3.5.2/library/mincombinr'
In R CMD INSTALL
Error in i.p(...) : 
  (converted from warning) installation of package ‘C:/Users/steph/AppData/Local/Temp/RtmpGgz05f/file19c8108e60ae/mincombinr_0.1.0.tar.gz’ had non-zero exit status

I think it's referencing this line:

minCombinR/R/gevitr_state.R

Line 9 in 9666096

.all_chart_types<-c(unique(chart_specifications$chart_type),"timeline","alignment","sequence logo") #obtain specif table from sysdata.R

Do you think this is a bug or a funny/stupid windows thing?

[amcrisan]

Thanks for this -- I know what the error is : sysdata is not being loaded properly. This error only happens on install, because the package otherwise loads normally in the environment. I think this is because gevitr_state is the only thing that doesn't have functions in it. So I did a weird fix to load it directly. Should help now

…

On Fri, Feb 22, 2019 at 12:14 PM Steve Kasica ***@***.***> wrote: Hey Ana, I'm trying to download MinCombinR, but running into some install trouble: > devtools::install_github('swkasica/minCombinR') Downloading GitHub repo ***@***.*** Skipping 2 packages not available: ggtree, treeio √ checking for file 'C:\Users\steph\AppData\Local\Temp\RtmpGgz05f\remotes19c8f3dbf\swkasica-minCombinR-2c85505/DESCRIPTION' ... - preparing 'mincombinr': √ checking DESCRIPTION meta-information ... - checking for LF line-endings in source and make files and shell scripts - checking for empty or unneeded directories - looking to see if a 'data/datalist' file should be added - building 'mincombinr_0.1.0.tar.gz' Installing package into ‘C:/Users/steph/R/R-3.5.2/library’ (as ‘lib’ is unspecified) * installing *source* package 'mincombinr' ... ** R ** inst ** byte-compile and prepare package for lazy loading Error in unique(chart_specifications$chart_type) : object 'chart_specifications' not found Error : unable to load R code in package 'mincombinr' ERROR: lazy loading failed for package 'mincombinr' * removing 'C:/Users/steph/R/R-3.5.2/library/mincombinr' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package ‘C:/Users/steph/AppData/Local/Temp/RtmpGgz05f/file19c8108e60ae/mincombinr_0.1.0.tar.gz’ had non-zero exit status I think it's referencing this line: https://github.com/amcrisan/minCombinR/blob/9666096e5a4cd1607aed73562ea328c132805812/R/gevitr_state.R#L9 Do you think this is a bug or a funny/stupid windows thing? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#3>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFJVnvcrMgna5w3Mv5CdL5U-ndTJubYTks5vQE_AgaJpZM4bKUYZ> .