Update inplace.yml workflow (#954)

* Update and rename inplace.yml to ci.yml
- Some restructuring
- Test more OSes
- Run tests with mpiexec
- Don't fail all environments if one test environment fails

.github/workflows/inplace.yml → .github/workflows/ci.yml

@@ -1,64 +1,104 @@
 # This workflow will install Python dependencies, run tests and lint with a single version of Python
 # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
 
-name: inplace
+name: ci
 
 on:
   push:
-    branches: [ main ]
+    branches:
+     - main
   pull_request:
-    branches: [ main ]
+    branches:
+     - main
+  workflow_dispatch:
 
 jobs:
-  build:
-
-    runs-on: ubuntu-latest
+  test:
+    runs-on: ${{ matrix.os }}
     strategy:
+      fail-fast: false
       matrix:
-        mpi: [ 'mpich', 'openmpi']
-    name: Test AMUSE with ${{ matrix.mpi }}
+        mpi:
+          - mpich
+          - openmpi
+        os:
+          - ubuntu-22.04
+          - ubuntu-20.04
+          # macOS is not ready yet - needs other setup of prerequisites
+          # - macos-12
+          # - macos-11
+        python:
+          - 3.7
+
     steps:
-    - uses: actions/checkout@v3
+
+    - name: Checkout
+      uses: actions/checkout@v3
+
     - name: Setup MPI
+      id:   setup-mpi
       uses: mpi4py/setup-mpi@v1
       with:
         mpi: ${{ matrix.mpi }}
+
+    - name: Show MPI name
+      run:  echo "${{ steps.setup-mpi.outputs.mpi }}"
+
+    - name: Show MPI info
+      run:  mpichversion
+      if:   ${{ matrix.mpi == 'mpich' }}
+
+    - name: Show MPI info
+      run:  ompi_info
+      if:   ${{ matrix.mpi == 'openmpi' }}
+
     - name: Set up JDK 1.8
       uses: actions/setup-java@v3.9.0
       with:
         distribution: 'zulu' # See 'Supported distributions' for available options
         java-version: '17'
-    - name: Set up Python 3.8
+
+    - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: 3.8
+        python-version: ${{ matrix.python }}
+        cache: 'pip'
+
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         sudo apt-get install gfortran libopenblas-dev libhdf5-openmpi-dev libgsl0-dev cmake libfftw3-3 libfftw3-dev libmpfr6 libmpfr-dev
         pip install numpy scipy matplotlib docutils mpi4py pytest pytest-timeout
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+
     - name: Install amuse
       run: |
         pip install -e .
+        ./configure
+
     - name: build AMUSE framework
       run: |
         make framework
+
     - name: build SSE and BHTree
       run: |
         make sse.code bhtree.code
+
     - name: check installation
       run: |
         amusifier --get-amuse-configmk
         pip list
+
     - name: archive build log
       uses: actions/upload-artifact@v3.1.1
       with:
           name: buildlog
           path: build.log
+
     - name: test core_tests
       run: |
         pytest --pyargs amuse.test.suite.core_tests -s
+
     - name: test compile_tests
       run: |
         ip link show
@@ -67,10 +107,11 @@ jobs:
       env:
         OMPI_MCA_rmaps_base_oversubscribe: 1
         OMPI_MCA_btl_tcp_if_include: lo
+
     - name: test code_tests
       run: |
-        pytest  --pyargs amuse.test.suite.codes_tests.test_bhtree -sv
-        pytest  --pyargs amuse.test.suite.codes_tests.test_sse -sv
+        mpiexec -n 1 pytest --pyargs amuse.test.suite.codes_tests.test_bhtree -sv
+        mpiexec -n 1 pytest --pyargs amuse.test.suite.codes_tests.test_sse -sv
       env:
         OMPI_MCA_rmaps_base_oversubscribe: 1
         OMPI_MCA_btl_tcp_if_include: lo