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Installing MESA into the AMUSE Framework #598
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Hello Sam,
Could you explain in a bit more detail what you are hoping to do?
AMUSE has a module for MESA, but this uses a different MESA version than the one you are using. Unfortunately it is not possible to drop in a newer version and use this with AMUSE (though we are hoping to update MESA at some point, and if you would be able and willing to help with this please let us know!).
Installing AMUSE on Catalina should work fine (I use this on a daily basis). Prior to installing AMUSE, you should install the prerequisites (gcc, openmpi/mpich, fftw, ...). After this, installing AMUSE should work fine, following the instructions on the website.
Steven Rieder
|
Hello Steve,
Thank you for responding to my question. My initial intention was to
find out what it would take to install MESA into AMUSE and to be able to
tun MESA under AMUSE. To this end, let me begin by asking where do I
find the procedure to install whatever version of MESA can be installed
into the AMUSE framework? Next, would you give me an idea as to scope of
the work to be done to install the current version of MESA into AMUSE.
Looking forward to hearing from you.
Sam Dupree.
…On February/29/2020 08:01:53, Steven Rieder wrote:
Hello Sam,
Could you explain in a bit more detail what you are hoping to do?
AMUSE has a module for MESA, but this uses a different MESA version
than the one you are using. Unfortunately it is not possible to drop
in a newer version and use this with AMUSE (though we are hoping to
update MESA at some point, and if you would be able and willing to
help with this please let us know!).
Installing AMUSE on Catalina should work fine (I use this on a daily
basis). Prior to installing AMUSE, you should install the
prerequisites (gcc, openmpi/mpich, fftw, ...). After this, installing
AMUSE should work fine, following the instructions on the website.
Steven Rieder
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To follow up, I attempted to install MESA into AMUSE following the procedure posted at [https://amuse.readthedocs.io/en/latest/install/howto-install-AMUSE.html]https://amuse.readthedocs.io/en/latest/install/howto-install-AMUSE.html. The results were:
the server is either down or no longer there. What is the correct URL for a version of MESA that can be installed in AMUSE? Please advise. Sam Dupree. |
Ah, that is a clear issue then. That server should be working, but clearly it isn't at the moment. I've asked the sysadmin to look into this, will get back to you once it's solved. |
Any status from the sysadmin? |
As of the date of this posting, 11-Mar-2020, the server
|amuse.strw.leidenuniv.nl is still not working. Any status from the
sysadmin? Furthermore, out of curiosity, what would be the effort and
the skill level required to import MESA into AMUSE?
|
Hi @OrbitalMechanic, |
To import the current version of MESA into AMUSE will mostly require knowledge of the inner workings of MESA, i.e. how to reach all the information and how to set parameters/properties/etc. We have a tracking issue for this (#520), and we could definitely help with the AMUSE side of the interface. |
On March/11/2020 18:08:11, Steven Rieder wrote:
Hi @OrbitalMechanic <https://github.com/OrbitalMechanic>,
That's strange, the server should be up and is reachable to me (it
might not respond to pings though), could you try to download the mesa
source files (http://amuse.strw.leidenuniv.nl/codes/mesa-r2208.tgz)?
This is currently working for me.
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I'm now able to download from the server and am attempting to build MESA
into AMUSE. I'll let you know how that turns out.
Sam Dupree.
|
On March/11/2020 18:12:37, Steven Rieder wrote:
To import the current version of MESA into AMUSE will mostly require
knowledge of the inner workings of MESA, i.e. how to reach all the
information and how to set parameters/properties/etc. We have a
tracking issue for this (#520
<#520>), and we could
definitely help with the AMUSE side of the interface.
A starting effort for a more modern MESA interface was made some years
ago, but I am unsure where this ended up ***@***.***
<https://github.com/ipelupessy> do you know this?).
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I'm now able to complete the MESA build portion of this installation,
but the build fails afterwards with the message:
make -s --no-print-directory -C ./mesa_reqs star FFLAGS="-g -O2 -fPIC"
gfortran -fno-range-check -fbounds-check -g -g -O2 -fPIC -g -O2 -fPIC
-I./src/mesa/include -c -ffree-form -I./src/mesa/star/make -I./mesa_reqs
-o interface.o interface.f
mpif90 -g -O2 -fPIC -g -O2 -fPIC
-I/Users/user/amuse-master/lib/forsockets worker_code.f90 interface.o
mesa_reqs/run_star_support.o mesa_reqs/run_star_extras.o
mesa_reqs/calibrate.o mesa_reqs/isochrone.o mesa_reqs/pgstar_stub.o
mesa_reqs/create_zams.o mesa_reqs/sample_zams.o mesa_reqs/run_star.o -o
mesa_worker -L./src/mesa/lib -lstar -ldiffusion -lionization -lmlt -latm
-lkaro -lcolors -leos -lkap -ljina -lweak -lnet -lscreen -lrates -lneu
-lchem -lnum -linterp_2d -linterp_1d -lutils -lalert -lconst -lmtx
-lmesalapack -lmesablas -L/Users/user/amuse-master/lib/forsockets
-lforsockets
worker_code.f90:490:10:
490 | use FortranSocketsInterface
| 1
Fatal Error: Cannot open module file 'fortransocketsinterface.mod' for
reading at (1): No such file or directory
compilation terminated.
make[1]: *** [mesa_worker] Error 1
****************************************************************************************************
********************************************************************************
Building finished
********************************************************************************
It seems that the FortranSocketsInterface.mod file is not being built.
Is there a seperate Makefile I need to run, or is there a step I'm missing?
Please advise.
Sam Dupree.
P.S. - The complete build log was captured in the attached file.
****************************************************************************************************
Building libraries and codes
****************************************************************************************************
****************************************************************************************************
Building code: mesa, target: all, in directory: src/amuse/community/mesa
****************************************************************************************************
amusifier --type=f90 interface.py MESAInterface -o worker_code.f90
make -C . download
rm -f -Rf src
mkdir src
/Users/user/opt/anaconda3/bin/python ./download.py
downloading version 2208 from http://amuse.strw.leidenuniv.nl/codes/mesa-r2208.tgz to mesa-r2208.tgz
downloading finished
unpacking mesa-r2208.tgz
done
/Users/user/opt/anaconda3/bin/python ./patch_files.py
patching file src/mesa/utils/makefile_header
patching file src/mesa/eos/public/eos_def.f
patching file src/mesa/jina/public/jina_def.f
patching file src/mesa/kap/public/kap_def.f
patching file src/mesa/net/public/net_def.f
patching file src/mesa/star/public/star_def.f
patching file src/mesa/star/test/src/create_zams.f
patching file src/mesa/alert/public/alert_lib.f
patching file src/mesa/utils/makefile_header
patching file src/mesa/atm/preprocessor/src/create_table_atm.f
patching file src/mesa/atm/private/table_atm.f
patching file src/mesa/atm/test/src/test_atm_support.f
patching file src/mesa/chem/private/chem_isos_io.f
patching file src/mesa/chem/public/chem_lib.f
patching file src/mesa/colors/private/mod_colors.f
patching file src/mesa/colors/test/src/test_colors.f
patching file src/mesa/diffusion/test/src/test_diffusion.f
patching file src/mesa/eos/eosDE_builder/src/create_eosDE_files.f
patching file src/mesa/eos/eosDE_builder/src/make_DEplots.f
patching file src/mesa/eos/eosDP_builder/src/create_eosDP_files.f
patching file src/mesa/eos/eosDP_builder/src/make_DPplots.f
patching file src/mesa/eos/eosDT_builder/src/EOS5_xtrin_H-He.f
patching file src/mesa/eos/eosDT_builder/src/create_eos_files.f
patching file src/mesa/eos/eosDT_builder/src/helm_opal_scvh_driver.f
patching file src/mesa/eos/eosDT_builder/src/make_DTplots.f
patching file src/mesa/eos/eosDT_builder/src/opal_core.f
patching file src/mesa/eos/eosDT_builder/src/scvh_core.f
patching file src/mesa/eos/eosDT_builder/src/xtrin.f
patching file src/mesa/eos/eosPT_builder/src/create_eosPT_files.f
patching file src/mesa/eos/eosPT_builder/src/make_PTplots.f
patching file src/mesa/eos/eosPT_builder/src/scvh_eval.f
patching file src/mesa/eos/private/eosDE_load_tables.f
patching file src/mesa/eos/private/eosDP_load_tables.f
patching file src/mesa/eos/private/eosDT_load_tables.f
patching file src/mesa/eos/private/eosPT_load_tables.f
patching file src/mesa/eos/private/eos_initialize.f
patching file src/mesa/eos/private/helm_alloc.f
patching file src/mesa/eos/public/eos_def.f
patching file src/mesa/eos/test/src/eos_support.f
patching file src/mesa/eos/test/src/plot_eosDE.f
patching file src/mesa/eos/test/src/plot_eosDP.f
patching file src/mesa/eos/test/src/plot_eosDT.f
patching file src/mesa/eos/test/src/plot_eosPT.f
patching file src/mesa/eos/test/src/sample_eos.f
patching file src/mesa/interp_1d/private/interp_1d_mp.f
patching file src/mesa/interp_1d/test/src/plot_interp_1d.f
patching file src/mesa/interp_2d/test/src/plot_interp_2d.f
patching file src/mesa/jina/private/reaclib_input.f
patching file src/mesa/jina/public/jina_def.f
patching file src/mesa/jina/test/src/test_jina.f
patching file src/mesa/kap/preprocessor/src/co_enhanced.f
patching file src/mesa/kap/preprocessor/src/create_tables.f
patching file src/mesa/kap/preprocessor/src/ferg.f
patching file src/mesa/kap/preprocessor/src/ferg_logP.f
patching file src/mesa/kap/preprocessor/src/fixed_metal.f
patching file src/mesa/kap/preprocessor/src/kap_support.f
patching file src/mesa/kap/preprocessor/src/opal_type2.f
patching file src/mesa/kap/preprocessor/src/plot.f
patching file src/mesa/kap/private/load_co_kap.f
patching file src/mesa/kap/private/load_kap.f
patching file src/mesa/kap/public/kap_def.f
patching file src/mesa/kap/test/src/plot_kap_model.f
patching file src/mesa/kap/test/src/sample_kap.f
patching file src/mesa/kap/test/src/test_kap_support.f
patching file src/mesa/karo/private/karo.f
patching file src/mesa/karo/test/src/test_karo.f
patching file src/mesa/mlt/private/mlt.f
patching file src/mesa/mtx/blas_src/mtx_lib.f
patching file src/mesa/net/private/net_initialize.f
patching file src/mesa/net/public/net_def.f
patching file src/mesa/net/test/src/plot_net.f
patching file src/mesa/net/test/src/test_net.f
patching file src/mesa/net/test/src/test_net_support.f
patching file src/mesa/num/private/mod_newton.f
patching file src/mesa/num/test/src/test_support.f
patching file src/mesa/pulse/private/ctrls_io.f
patching file src/mesa/rates/private/rates_initialize.f
patching file src/mesa/rates/test/src/test_rates.f
patching file src/mesa/screen/test/src/test_screen.f
patching file src/mesa/star/private/adjust_xyz.f
patching file src/mesa/star/private/ctrls_io.f
patching file src/mesa/star/private/do_one_utils.f
patching file src/mesa/star/private/evolve_support.f
patching file src/mesa/star/private/hydro_newton.f
patching file src/mesa/star/private/log.f
patching file src/mesa/star/private/profile.f
patching file src/mesa/star/private/read_model.f
patching file src/mesa/star/private/star_private_def.f
patching file src/mesa/star/private/star_utils.f
patching file src/mesa/star/private/winds.f
patching file src/mesa/star/public/star_def.f
patching file src/mesa/star/test/src/calibrate.f
patching file src/mesa/star/test/src/create_zams.f
patching file src/mesa/star/test/src/isochrone.f
patching file src/mesa/star/test/src/pgstar.f
patching file src/mesa/star/test/src/pgstar_hr.f
patching file src/mesa/star/test/src/pgstar_summary.f
patching file src/mesa/star/test/src/pgstar_support.f
patching file src/mesa/star/test/src/pgstar_trho.f
patching file src/mesa/star/test/src/run_star_support.f
patching file src/mesa/star/test_suite/rlo/src/rlo_exp.f
patching file src/mesa/utils/public/utils_lib.f
patching file src/mesa/utils/test/src/test_utils.f
patching file src/mesa/weaklib/private/load_weak.f
patching file src/mesa/weaklib/public/weak_def.f
patching file src/mesa/weaklib/test/src/test_weak.f
patching file src/mesa/kap/test/src/test_kap_support.f
patching file src/mesa/kap/test/test_output
patching file src/mesa/utils/makefile_header
patching file src/mesa/utils/makefile_header
checking if quilt is installed ... no
applying patches to source code
cp -f ./install ./src/mesa
cp -f ./test_jina.f ./src/mesa/jina/test/src/test_jina.f
cd ./src/mesa; ./install MPIFC="mpif90 -g -O2 -fPIC -g -O2 -fPIC" OPENMP_FCFLAGS=
checking if ndiff is installed ...
./install_num_only: line 50: utils/ndiff/bin/ndiff: No such file or directory
no! running install_ndiff
ndiff installed in utils/ndiff/
/Users/user/amuse-master/src/amuse/community/mesa/src/mesa/const
building const package.
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/const_def.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/const_lib.f
ar crs libconst.a const_def.o const_lib.o
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_const.f
mpif90 -g -O2 -fPIC -o ../tester test_const.o -L../../make -lconst
export
done
mesa const has been made, tested, and exported.
************************************************
/Users/user/amuse-master/src/amuse/community/mesa/src/mesa/alert
building alert package.
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/alert_lib.f
ar crs libalert.a alert_lib.o
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_alert.f
mpif90 -g -O2 -fPIC -o ../tester test_alert.o -L../../make -lalert -L../../../lib
export
done
mesa alert has been made, tested, and exported.
************************************************
/Users/user/amuse-master/src/amuse/community/mesa/src/mesa/utils
building utils package.
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form ../public/utils_def.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form ../private/utils_isnan_okay.f
../private/utils_isnan_okay.f:38:36:
38 | is_real_inf = (2*x==x .and. x /= 0)
| 1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
../private/utils_isnan_okay.f:38:24:
38 | is_real_inf = (2*x==x .and. x /= 0)
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
../private/utils_isnan_okay.f:32:31:
32 | is_inf = (2*x==x .and. x /= 0)
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/utils_isnan_okay.f:32:19:
32 | is_inf = (2*x==x .and. x /= 0)
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
mpif90 -g -O2 -fPIC -fno-range-check -Wunused-value -W -I../public -I../private -I../../include -c -ffree-form ../private/utils_nan.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form ../private/utils_dict.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form ../public/utils_lib.f
ar crs libutils.a utils_isnan_okay.o utils_nan.o utils_dict.o utils_lib.o
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_utils.f
mpif90 -g -O2 -fPIC -o ../tester test_utils.o -L../../make -lutils -L../../../lib -lalert
export
done
mesa utils has been made, tested, and exported.
************************************************
/Users/user/amuse-master/src/amuse/community/mesa/src/mesa/mtx
building mtx package.
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/mtx_def.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mtx_support.f
../private/mtx_support.f:264:19:
264 | if (a(i,j) == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mtx_support.f:211:19:
211 | if (a(i,j) == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mtx_support.f:150:19:
150 | if (val == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mtx_support.f:87:19:
87 | if (ab(ldab-ml+i-j,j) == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mtx_block_tridiagonal.f
../private/mtx_block_tridiagonal.f:228:19:
228 | if (bad_mtx(j, i) == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mtx_block_tridiagonal.f:247:19:
247 | if (bad_mtx(i, j) == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../superlu_src/mod_superlu_stub.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/blassm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/formats.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/ilut.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/infofun.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/matvec.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/inout.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../sparskit_src/unary.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/mtx_lib.f
mtx_tridiag_decsol.dek:247:16:
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
ar crs libmtx.a mtx_support.o mtx_block_tridiagonal.o mod_superlu_stub.o blassm.o formats.o ilut.o infofun.o matvec.o inout.o unary.o mtx_lib.o
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dgemm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dtrsm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/xerbla.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/lsame.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dger.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dcopy.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dgemv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dtbsv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/daxpy.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/ddot.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dgbmv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dasum.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dtrsv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dscal.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/dswap.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/idamax.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/strsm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/sgemm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/slamch.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/isamax.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/sswap.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/sscal.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/sger.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/zaxpy.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/zdotc.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/zgerc.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/zhemv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/zher2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/ztrsv.f
ar crs libmesablas.a dgemm.o dtrsm.o xerbla.o lsame.o dger.o dcopy.o dgemv.o dtbsv.o daxpy.o ddot.o dgbmv.o dasum.o dtrsv.o dscal.o dswap.o idamax.o strsm.o sgemm.o slamch.o isamax.o sswap.o sscal.o sger.o zaxpy.o zdotc.o zgerc.o zhemv.o zher2.o ztrsv.o
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbcon.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbequ.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbrfs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbsv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbsvx.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbtf2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbtrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgbtrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgecon.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgeequ.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgerfs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgesv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgesvx.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgetf2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgetrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgetrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgtcon.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgtrfs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgtsvx.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgttrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgttrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dgtts2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlacn2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlabad.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlacpy.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlagtm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlangb.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlange.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlangt.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlantb.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlantr.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlaqgb.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlaqge.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlassq.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlaswp.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlatbs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dlatrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/drscl.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/sgesv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/sgetf2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/sgetrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/sgetrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/slaswp.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgbtrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgbtrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgetrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgetrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgetf2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zlaswp.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zlacgv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zswap.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgeru.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/ztbsv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgemv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/ztrsm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgbtf2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/izamax.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgttrf.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgttrs.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgtts2.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zscal.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zcopy.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/zgemm.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../lapack_src/dcabs1.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/ilaenv.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -ffixed-form -ffixed-line-length-132 -c -w ../blas_src/dlamch.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -c -ffixed-form -ffixed-line-length-132 -w ../blas_src/ieeeck.f
ar crs libmesalapack.a dgbcon.o dgbequ.o dgbrfs.o dgbsv.o dgbsvx.o dgbtf2.o dgbtrf.o dgbtrs.o dgecon.o dgeequ.o dgerfs.o dgesv.o dgesvx.o dgetf2.o dgetrf.o dgetrs.o dgtcon.o dgtrfs.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dlacn2.o dlabad.o dlacn2.o dlacpy.o dlagtm.o dlangb.o dlange.o dlangt.o dlantb.o dlantr.o dlaqgb.o dlaqge.o dlassq.o dlaswp.o dlatbs.o dlatrs.o drscl.o sgesv.o sgetf2.o sgetrf.o sgetrs.o slaswp.o zgbtrf.o zgbtrs.o zgetrf.o zgetrs.o zgetf2.o zlaswp.o zlacgv.o zswap.o zgeru.o ztbsv.o zgemv.o ztrsm.o zgbtf2.o izamax.o zgttrf.o zgttrs.o zgtts2.o zscal.o zcopy.o zgemm.o dcabs1.o ilaenv.o dlamch.o ieeeck.o
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/lu_test.f
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_superlu.f
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_sparskit.f
mpif90 -g -O2 -fPIC -fno-range-check -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffixed-form -ffixed-line-length-132 ../src/test_mtx.f
mpif90 -g -O2 -fPIC -o ../tester lu_test.o test_superlu.o test_sparskit.o test_mtx.o -L../../make -lmtx -L../../../lib -lmesalapack -lmesablas -lutils -lalert
export
done
mesa mtx has been made, tested, and exported.
************************************************
/Users/user/amuse-master/src/amuse/community/mesa/src/mesa/num
building num package.
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../public/num_def.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_dop853.f
../private/mod_dop853.f:447:132:
447 | 22 y1(i)=y(i)+h*a21*k1(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 22 at (1)
../private/mod_dop853.f:451:132:
451 | 23 y1(i)=y(i)+h*(a31*k1(i)+a32*k2(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 23 at (1)
../private/mod_dop853.f:455:132:
455 | 24 y1(i)=y(i)+h*(a41*k1(i)+a43*k3(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 24 at (1)
../private/mod_dop853.f:459:132:
459 | 25 y1(i)=y(i)+h*(a51*k1(i)+a53*k3(i)+a54*k4(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
../private/mod_dop853.f:463:132:
463 | 26 y1(i)=y(i)+h*(a61*k1(i)+a64*k4(i)+a65*k5(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 26 at (1)
../private/mod_dop853.f:467:132:
467 | 27 y1(i)=y(i)+h*(a71*k1(i)+a74*k4(i)+a75*k5(i)+a76*k6(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 27 at (1)
../private/mod_dop853.f:471:132:
471 | 28 y1(i)=y(i)+h*(a81*k1(i)+a84*k4(i)+a85*k5(i)+a86*k6(i)+a87*k7(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 28 at (1)
../private/mod_dop853.f:476:132:
476 | & +a98*k8(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 29 at (1)
../private/mod_dop853.f:481:132:
481 | & +a107*k7(i)+a108*k8(i)+a109*k9(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
../private/mod_dop853.f:486:132:
486 | & +a117*k7(i)+a118*k8(i)+a119*k9(i)+a1110*k10(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 31 at (1)
../private/mod_dop853.f:492:132:
492 | & +a127*k7(i)+a128*k8(i)+a129*k9(i)+a1210*k10(i)+a1211*k2(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 32 at (1)
../private/mod_dop853.f:499:132:
499 | 35 k5(i)=y(i)+h*k4(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
../private/mod_dop853.f:510:132:
510 | 41 err=err+(erri/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1)
../private/mod_dop853.f:518:132:
518 | 42 err=err+(erri/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 42 at (1)
../private/mod_dop853.f:583:132:
583 | & +a1413*k4(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 51 at (1)
../private/mod_dop853.f:589:132:
589 | & +a1514*k10(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 52 at (1)
../private/mod_dop853.f:595:132:
595 | & +a1615*k2(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 53 at (1)
../private/mod_dop853.f:615:132:
615 | 67 y(i)=k5(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 67 at (1)
../private/mod_dop853.f:686:132:
686 | 10 dny=dny+(y(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
../private/mod_dop853.f:691:132:
691 | 11 dny=dny+(y(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1)
../private/mod_dop853.f:702:132:
702 | 12 y1(i)=y(i)+h*f0(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 12 at (1)
../private/mod_dop853.f:710:132:
710 | 15 der2=der2+((f1(i)-f0(i))/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1)
../private/mod_dop853.f:714:132:
714 | 16 der2=der2+((f1(i)-f0(i))/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 16 at (1)
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_dopri5.f
../private/mod_dopri5.f:80:132:
80 | 16 iwork(20+i)=i
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 16 at (1)
../private/mod_dopri5.f:281:132:
281 | 22 y1(i)=y(i)+h*a21*k1(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 22 at (1)
../private/mod_dopri5.f:285:132:
285 | 23 y1(i)=y(i)+h*(a31*k1(i)+a32*k2(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 23 at (1)
../private/mod_dopri5.f:289:132:
289 | 24 y1(i)=y(i)+h*(a41*k1(i)+a42*k2(i)+a43*k3(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 24 at (1)
../private/mod_dopri5.f:293:132:
293 | 25 y1(i)=y(i)+h*(a51*k1(i)+a52*k2(i)+a53*k3(i)+a54*k4(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
../private/mod_dopri5.f:297:132:
297 | 26 ysti(i)=y(i)+h*(a61*k1(i)+a62*k2(i)+a63*k3(i)+a64*k4(i)+a65*k5(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 26 at (1)
../private/mod_dopri5.f:302:132:
302 | 27 y1(i)=y(i)+h*(a71*k1(i)+a73*k3(i)+a74*k4(i)+a75*k5(i)+a76*k6(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 27 at (1)
../private/mod_dopri5.f:313:132:
313 | 28 k4(i)=(e1*k1(i)+e3*k3(i)+e4*k4(i)+e5*k5(i)+e6*k6(i)+e7*k2(i))*h
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 28 at (1)
../private/mod_dopri5.f:320:132:
320 | 41 err=err+(k4(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1)
../private/mod_dopri5.f:324:132:
324 | 42 err=err+(k4(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 42 at (1)
../private/mod_dopri5.f:374:132:
374 | 44 y(i)=y1(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1)
../private/mod_dopri5.f:447:132:
447 | 10 dny=dny+(y(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
../private/mod_dopri5.f:452:132:
452 | 11 dny=dny+(y(i)/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1)
../private/mod_dopri5.f:463:132:
463 | 12 y1(i)=y(i)+h*f0(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 12 at (1)
../private/mod_dopri5.f:471:132:
471 | 15 der2=der2+((f1(i)-f0(i))/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1)
../private/mod_dopri5.f:475:132:
475 | 16 der2=der2+((f1(i)-f0(i))/sk)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 16 at (1)
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mod_cash_karp.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_dc_decsol.f
slvrod.dek:243:132:
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 623 at (1)
slvrod.dek:244:132:
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 624 at (1)
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_rosenbrock.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_sodex.f
../private/mod_sodex.f:447:132:
447 | 1 nj(i)=2*nj(i-2)+nj(1)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1)
../private/mod_sodex.f:452:132:
452 | 4 a(i)=a(i-1)+nj(i)*wkrow+wkdec
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1)
../private/mod_sodex.f:525:132:
525 | 15 fjac(l+mujacj,j)=(yh(l)-dy(l))/del(j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1)
../private/mod_sodex.f:564:132:
564 | 19 fx(j)=(yh(j)-dy(j))/delt
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 19 at (1)
../private/mod_sodex.f:656:132:
656 | 70 y(i)=t1i
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1)
../private/mod_sodex.f:664:132:
664 | 75 yh(i)=y(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1)
../private/mod_sodex.f:774:132:
774 | 125 e(i+mle,j)=-fjac(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 125 at (1)
../private/mod_sodex.f:779:132:
779 | 126 e(ib,j)=e(ib,j)+hji*fmas(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 126 at (1)
../private/mod_sodex.f:787:132:
787 | do 225 i=1,n
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 225 at (1)
../private/mod_sodex.f:788:132:
788 | 225 e(i,j)=-fjac(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 225 at (1)
../private/mod_sodex.f:792:132:
792 | do 226 i=i1,i2
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 226 at (1)
../private/mod_sodex.f:793:132:
793 | 226 e(i,j)=e(i,j)+hji*fmas(i-j+mbdiag,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 226 at (1)
../private/mod_sodex.f:800:132:
800 | do 324 i=1,n
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 324 at (1)
../private/mod_sodex.f:801:132:
801 | 324 e(i,j)=fmas(i,j)*hji-fjac(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 324 at (1)
../private/mod_sodex.f:808:132:
808 | do 405 i=1,n
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 405 at (1)
../private/mod_sodex.f:809:132:
809 | 405 e(i,j)=fmas(i,j)*hji
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 405 at (1)
../private/mod_sodex.f:813:132:
813 | do 406 i=i1,i2
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 406 at (1)
../private/mod_sodex.f:814:132:
814 | 406 e(i,j)=e(i,j)-fjac(i-j+madd,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 406 at (1)
../private/mod_sodex.f:827:132:
827 | 425 e(i+mle,j)=-fjac(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 425 at (1)
../private/mod_sodex.f:828:132:
828 | 427 e(mdiag,j)=e(mdiag,j)+hji
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 427 at (1)
../private/mod_sodex.f:849:132:
849 | 525 e(i,j)=-fjac(i,j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 525 at (1)
../private/mod_sodex.f:850:132:
850 | 526 e(j,j)=e(j,j)+hji
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 526 at (1)
../private/mod_sodex.f:861:132:
861 | 20 del(i)=dy(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
../private/mod_sodex.f:864:132:
864 | 634 del(i)=del(i)+hj*fx(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 634 at (1)
../private/mod_sodex.f:883:132:
883 | 23 yh(i)=yh(i)+del(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 23 at (1)
../private/mod_sodex.f:892:132:
892 | 360 sum=sum+fmas(i,j)*del(j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1)
../private/mod_sodex.f:893:132:
893 | 361 wh(i)=sum
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 361 at (1)
../private/mod_sodex.f:900:132:
900 | 362 sum=sum+fmas(i-j+mbdiag,j)*del(j)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 362 at (1)
../private/mod_sodex.f:901:132:
901 | 363 wh(i)=sum
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 363 at (1)
../private/mod_sodex.f:905:132:
905 | 24 dyh(i)=2.d0*(dyh(i)-hji*wh(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 24 at (1)
../private/mod_sodex.f:909:132:
909 | 28 dyh(i)=2.d0*(dyh(i)-hji*del(i))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 28 at (1)
../private/mod_sodex.f:926:132:
926 | 21 del1=del1+(del(i)/scal(i))**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 21 at (1)
../private/mod_sodex.f:930:132:
930 | 26 del2=del2+(dyh(i)/scal(i))**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 26 at (1)
../private/mod_sodex.f:936:132:
936 | 25 del(i)=del(i)+dyh(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
../private/mod_sodex.f:941:132:
941 | 34 dyh(i)=dyh(i)-hji*wh(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1)
../private/mod_sodex.f:944:132:
944 | 36 dyh(i)=dyh(i)-hji*del(i)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 36 at (1)
../private/mod_sodex.f:964:132:
964 | do 60 i=1,n
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 60 at (1)
../private/mod_sodex.f:969:132:
969 | 65 err=err+min(abs((t(1,i)-t(2,i)))/scal(i),1.d10)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1)
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_seulex.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -O2 -ffixed-form -ffixed-line-length-132 -c ../private/mod_radau5.f
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mod_root.f
../private/mod_root.f:292:16:
292 | if (dydx == 0) exit ! try safe_root
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_root.f:64:13:
64 | if (y1 == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_root.f:68:13:
68 | if (y3 == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_root.f:79:13:
79 | if (x_guess == arg_not_provided) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_root.f:112:22:
112 | do while (dydx /= 0 .and. abs(2*ym) < abs(dxold*dydx))
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_root.f:124:19:
124 | if (y32 /= 0) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mod_solout_root.f
../private/mod_solout_root.f:68:13:
68 | if (y1 == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_solout_root.f:72:13:
72 | if (y3 == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_solout_root.f:83:13:
83 | if (x_guess == arg_not_provided) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_solout_root.f:116:22:
116 | do while (dydx /= 0 .and. abs(2*ym) < abs(dxold*dydx))
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_solout_root.f:128:19:
128 | if (y32 /= 0) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
mpif90 -g -O2 -fPIC -fno-range-check -I../public -I../private -I../../include -Wunused-value -W -fimplicit-none -O2 -c -ffixed-form -ffixed-line-length-132 ../private/mod_newton.f
../private/mod_newton.f:1202:16:
1202 | if (work(r_alpha_current) == 0) work(r_alpha_current) = 1
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:1235:36:
1235 | if (dxd(ivar,k)-dxsave(ivar,k) /= 0) exit
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:1307:25:
1307 | if (dxdd(ivar,zone).eq.dxsave(ivar,zone)) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:1018:16:
1018 | if (coeff == 1) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:985:22:
985 | if (a1 == 0) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:773:16:
773 | if (work(r_tol_residual_norm)==0) work(r_tol_residual_norm)=1d99
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:774:16:
774 | if (work(r_tol_max_residual)==0) work(r_tol_max_residual)=1d99
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:775:16:
775 | if (work(r_tol_max_correction)==0) work(r_tol_max_correction)=1d99
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:776:16:
776 | if (work(r_target_corr_factor) == 0) work(r_target_corr_factor) = 0.9d0
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:777:16:
777 | if (work(r_scale_correction_norm) == 0) work(r_scale_correction_norm) = 2d0
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:778:16:
778 | if (work(r_corr_param_factor) == 0) work(r_corr_param_factor) = 10d0
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.f:779:16:
779 | if (work(r_scale_max_correction) == 0) work(r_scale_max_correction) = 1d99
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
../private/mod_newton.
|
@rieder its at https://github.com/amusecode/amuse-sandbox/tree/master/nathan/mesa6794 |
@OrbitalMechanic yea, you need to have the framework build, if you are building from a repository checkout:
or
|
Doing the framework build followed by the MESA build did the trick. Lastly, I do have one (I hope) final question dealing with testing. I ran nosetest and got the following result: (amuse) user@Samuels-Mac-Pro amuse-master % nosetests Your Open MPI job may now hang or fail. Local host: Samuels-Mac-Pro
|
can you try:
(are you trying all nosetests or just mesa ones?) |
On March/12/2020 13:17:08, Inti Pelupessy wrote:
can you try:
|mpiexec nosetests |
(are you trying all nosetests or just mesa ones?)
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#598 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/ABEO3572U6W32CDKZJRAL4DRHEKJJANCNFSM4K6LZXEA>.
At present I'm attempting to test the AMUSE packages before testing the
MESA installation. I ran the command mpiexec nosetests and attached the
output as a compressed file to this note (the original file is too big
to attach). Being relatively new to Open-MPI or MPI for that matter, I
can't make too much out of what the output is saying except that the
issue seems to center about the nodes that are attemtpting to be allocated.
Any suggestions?
Sam Dupree.
|
can you try setting this environment var:
|
On March/12/2020 14:51:23, Inti Pelupessy wrote:
can you try setting this environment var:
|export OMPI_MCA_rmaps_base_oversubscribe=yes |
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You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#598 (comment)>,
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<https://github.com/notifications/unsubscribe-auth/ABEO3563B45ZRFVB5F6YYATRHEVKXANCNFSM4K6LZXEA>.
Attached is a file showing the output from running mpiexec nosetests
where the environment vari|ables export
OMPI_MCA_rmaps_base_oversubscribe=yes and ||||export
OMPI_MCA_orte_base_help_aggregate=0 where set. After 20 minutes, the
command is still running.|
|||Could the problem be that I'm running with Open-MPI as opposed to
mpich?||
|
|Sam Dupree.
|
|
|
||
||
||
||
Last login: Thu Mar 12 13:54:28 on ttys000
(base) user@Samuels-Mac-Pro ~ % conda activate amuse
(amuse) user@Samuels-Mac-Pro ~ % cd amuse-master
(amuse) user@Samuels-Mac-Pro amuse-master % export OMPI_MCA_rmaps_base_oversubscribe=yes
(amuse) user@Samuels-Mac-Pro amuse-master % mpiexec nosetests
EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.............--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 43408
Message: connect() to 100.98.14.14:1038 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
[Samuels-Mac-Pro.local:43401] 11 more processes have sent help message help-mpi-btl-tcp.txt / client connect fail
[Samuels-Mac-Pro.local:43401] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
^Zmpiexec: Forwarding signal 18 to job
^C% (amuse) user@Samuels-Mac-Pro amuse-master % export OMPI_MCA_rmaps_base_oversubscribe=yes
(amuse) user@Samuels-Mac-Pro amuse-master % export OMPI_MCA_orte_base_help_aggregate=0
(amuse) user@Samuels-Mac-Pro amuse-master % mpiexec nosetests
EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE....EEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEE...EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEE..--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47449
Message: connect() to 100.98.14.14:1040 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47448
Message: connect() to 100.98.14.14:1047 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47442
Message: connect() to 100.98.14.14:1046 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47450
Message: connect() to 100.98.14.14:1041 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47451
Message: connect() to 100.98.14.14:1045 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47440
Message: connect() to 100.98.14.14:1036 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47443
Message: connect() to 100.98.14.14:1037 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47447
Message: connect() to 100.98.14.14:1039 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47445
Message: connect() to 100.98.14.14:1044 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47444
Message: connect() to 100.98.14.14:1043 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47446
Message: connect() to 100.98.14.14:1038 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: Open MPI failed to TCP connect to a peer MPI process. This
should not happen.
Your Open MPI job may now hang or fail.
Local host: Samuels-Mac-Pro
PID: 47441
Message: connect() to 100.98.14.14:1042 failed
Error: Operation now in progress (36)
--------------------------------------------------------------------------
|
do you know if mpi by itself works? e.g.
if this works, can you try an MPI hello world: https://mpitutorial.com/tutorials/mpi-hello-world/
(this doesn't use MPI)
|
This issue has been automatically marked as stale because it has not had recent activity. It will be closed in 28 days if no further activity occurs. Thank you for your contributions. |
new mesa has been merged recently, further, this issue has diverged into another error discussion, please reopen this in new issue if necessary. Closing |
I presently have MESA (release r12115) installed and running on my Mac Pro (2019) running Mac OS X ver. 10.15.3 (Catalina). I'd like to install MESA into the AMUSE Framework. Is anyone aware of a procedure that performs the installation under the Anaconda distribution (ver. 3.7) on a Mac Pro under the Catalina operating system in zsh (z shell)?
Please advise.
Sam Dupree.
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