Parameter Inference and Identification
Ayush Pandey edited this page Sep 3, 2019
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Bioscrape can be used to run Bayesian parameter inference. To get started look at the following jupyter notebooks available in bioscrape/examples -
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Parameter Identification Simple Test : To check if things are working and getting a broad idea of the import statements and various arguments.
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Parameter Identification Tools and Advanced Examples : This notebook has lot more details and runs identification of two parameters in a simple model with different initial conditions and timepoints.
If the two notebooks above don't satisfy your requirements, you might be interested in the following jupyter notebook in bioscrape/tests folder -
- Likelihood and Data objects : To understand how things are working internally in bioscrape and how log likelihood objects are computed. At this point, it would probably be best to raise issues in Github with your enhancement requests that we can discuss.