Skip to content
Supplementary material for manuscript
HTML Other
  1. HTML 98.9%
  2. Other 1.1%
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
S1_qPCR_ER @ ce03ae5
S2_ChIP-seq_ER
S3_qPLEX-RIME_ER @ 19cf803
S4_qPLEX-RIME_GRHL2
S5_ChIP-seq_GRHL2
S6_eRNA
S7_ChIP-seq_H3K27ac_siGRHL2 @ 3cacb69
packages
.gitignore
.gitmodules
README.md

README.md

VULCAN Supplementary

Bioconductor Package https://bioconductor.org/packages/release/bioc/html/vulcan.html

Source Data can be found on GEO, GSE109820.

  • Supplementary File 1 - S1_qPCR_ER/Manuscript_Figures.pdf
  • Supplementary File 2 - S2_ChIP-seq_ER/rmarkdown.pdf
  • Supplementary File 3 - S3_qPLEX-RIME_ER/02.Supplementary.pdf
  • Supplementary File 4 - S4_qPLEX-RIME_GRHL2/rRunTMTanalysis.pdf
  • Supplementary File 5 - S5_ChIP-seq_GRHL2/Manuscript_Figures.pdf
  • Supplementary File 6 - S6_eRNA/plot_eRNA.pdf
  • Supplementary File 7 - S7_ChIP-seq_H3K27ac_siGRHL2/Rmarkdown.pdf

Manuscript DOI pending

License

This is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You can obtain a copy of the GNU General Public License
along with this program from <https://www.gnu.org/licenses/>.

Potential Errors

  • If brca-expmat.rda is not found ..
cd ChIP-seq_ER/data/
cat brca-expmat.rda.part1 brca-expmat.rda.part2 > brca-expmat.rda
  • qPLEX Analyser package not found

Install the package found in the packages directory.

You can’t perform that action at this time.