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fMRIPrep_Demo.rst

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fMRIPrep Demonstration


This module will demonstrate how to use fMRIPrep to analyze a publicly available dataset on OpenNeuro.org. We will analyze the same dataset that we used for the :ref:`AFNI tutorial <AFNI_Overview>`, and then compare the results. This will allow you to make an educated decision about what type of analysis pipeline is best for you.

Note

This page by Saren Seeley is a useful overview of BIDS and fMRIPREP, as well as solutions to some common issues that come up during preprocessing.

.. toctree::
   :maxdepth: 1
   :caption: Open Science Topics

   fMRIPrep_Demo_1_Download
   fMRIPrep_Demo_2_RunningAnalysis
   fMRIPrep_Demo_3_ExaminingPreprocData
   fMRIPrep_Demo_4_AdditionalPreproc
   fMRIPrep_Demo_5_1stLevelAnalysis
   fMRIPrep_Demo_6_GroupAnalysis
   fMRIPrep_Demo_7_AnalyzingWithCluster