c warnings about fgets return var and libtool for vagrant

andrewjpage · Jun 29, 2015 · 6b4c138 · 6b4c138
1 parent 0f9258a
commit 6b4c138
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Showing 3 changed files with 5 additions and 4 deletions.
diff --git a/release/manifests/trustyvm.pp b/release/manifests/trustyvm.pp
@@ -2,7 +2,7 @@
     ensure => "installed"
     }
 
-package { ["gcc", "build-essential", "pkg-config","ntp"]:
+package { ["gcc", "build-essential", "pkg-config","ntp","libtool"]:
     ensure => "installed"
     }
 

diff --git a/src/Newickform.c b/src/Newickform.c
@@ -36,6 +36,7 @@ newick_node* build_newick_tree(char * filename, FILE *vcf_file_pointer,int * snp
 	char *pcOutputFile;
 	char acStrArray[256];
 	newick_node *root;
+    char *returnchar;
 
 	FILE *f;
 
@@ -57,7 +58,7 @@ newick_node* build_newick_tree(char * filename, FILE *vcf_file_pointer,int * snp
 	while (1)
 	{
 		memset(acStrArray, '\0', 256);
-		fgets(acStrArray, 255, f);
+		returnchar = fgets(acStrArray, 255, f);
 		if (acStrArray[0] == '\0' && feof(f))
 		{
 			break;

diff --git a/src/parse_vcf.c b/src/parse_vcf.c
@@ -129,10 +129,10 @@ int get_number_of_snps(FILE * vcf_file_pointer)
 	int i = 0;
 	int length_of_line =0;
 	char szBuffer[2] = {0};  
-
+    char *returnchar;	
 	do{
 		// check the first character of the line to see if its in the header
-		fgets(szBuffer, sizeof(szBuffer), vcf_file_pointer);
+		returnchar = fgets(szBuffer, sizeof(szBuffer), vcf_file_pointer);
 		if(szBuffer[0] != '#')
 		{
 			i++;