Default to include data/ files?

[tseemann]

I note that data/ has the files downloaded.
It would be great if it could default to use those.
Are they part of the pip resources section?

eg.

parser.add_argument('--output_prefix',	 '-o', help='Output directory', 
   default =   pkg_resources.get_distribution("plasmidpredictor").the_files_we_need)

I guess the reason is ethical/political

Could make everyone cite Plasmidfinder as well as your future JOSS paper.

[andrewjpage]

I've bundled the database and included it by default if you dont provide a database. I've also added the plasmidfinder paper citation to the readme and updated the location to point to their bitbucket version instead of the old zip.