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@Victorian-Bioinformatics-Consortium

Popular repositories

  1. prokka

    ⚡️ ♒️ Rapid prokaryotic genome annotation

    Perl 106 61

  2. snippy

    ✂️ ⚡️ Rapid bacterial SNP calling and core genome alignments

    Perl 47 10

  3. nullarbor

    💾 📃 "Reads to report" for public health and clinical microbiology

    Perl 39 8

  4. barrnap

    🔬 ♌️ Bacterial ribosomal RNA predictor

    Perl 31 12

  5. abricate

    🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

    Perl 31 3

  6. mlst

    🆔 Scan contig files against PubMLST typing schemes

    Perl 24 5

955 contributions in the last year

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Contribution activity First issue First repository Joined GitHub

September 2017

Created a pull request in Homebrew/homebrew-science that received 5 comments

gubbins: remove "with-double" build option from fasttree dependency

I removed the --with-double on fasttree as it is now the default on the brew recipe.

Created an issue in shenwei356/seqkit that received 7 comments

fx2tab slower than shell commands

fx2tab seems to be about 4 times slower than shell commands. Is that expected? $ time (zcat R1_001.fastq.gz | paste - - - - | cut -f 1,2,4 > /dev/n…

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