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Highlights

  • Arctic Code Vault Contributor
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Organizations

@Victorian-Bioinformatics-Consortium @pha4ge

Pinned

  1. Rapid prokaryotic genome annotation

    Perl 407 148

  2. ✂️ Rapid haploid variant calling and core genome alignment

    Perl 220 67

  3. ♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

    Perl 109 24

  4. 🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

    Perl 137 39

  5. 💾 📃 "Reads to report" for public health and clinical microbiology

    Perl 83 30

  6. 🆔 Scan contig files against PubMLST typing schemes

    Perl 82 25

741 contributions in the last year

Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Mon Wed Fri

Contribution activity

November 2020

Reviewed 1 pull request in 1 repository
bioconda/bioconda-recipes 1 pull request

Created an issue in ncbi/amr that received 2 comments

makeblastdb on custom databases?

The -u (update) option does two things: DOWNLOAD FORMAT (makeblastdb) Could you please add an option to (re)-format the BLAST databases (CDS and …

2 comments
6 contributions in private repositories Nov 10 – Nov 20

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