Pinned

1. prokka Public

   ⚡ ♒ Rapid prokaryotic genome annotation

   Perl 662 207

2. snippy Public

   ✂️ ⚡ Rapid haploid variant calling and core genome alignment

   Perl 385 109

3. shovill Public

   ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

   Perl 176 37

4. abricate Public

   🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

   Perl 267 68

5. nullarbor Public

   💾 📃 "Reads to report" for public health and clinical microbiology

   Perl 118 35

6. mlst Public

   🆔 Scan contig files against PubMLST typing schemes

   Shell 147 38