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Organizations

@Victorian-Bioinformatics-Consortium

Pinned repositories

  1. prokka

    ⚡️ ♒️ Rapid prokaryotic genome annotation

    Perl 178 87

  2. snippy

    ✂️ ⚡️ Rapid haploid variant calling and core genome alignment

    Perl 90 24

  3. shovill

    Faster SPAdes assembly of Illumina reads

    Perl 66 11

  4. abricate

    🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

    Perl 58 12

  5. nullarbor

    💾 📃 "Reads to report" for public health and clinical microbiology

    Perl 54 14

  6. mlst

    🆔 Scan contig files against PubMLST typing schemes

    Perl 38 11

1,948 contributions in the last year

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Contribution activity

October 2018

Created a pull request in brewsci/homebrew-bio that received 25 comments

gemma 0.98 [torsten]

Have you followed the guidelines for contributing? Have you checked that there aren't other open pull requests for the same formula update/change?

+32 −0 25 comments

Created an issue in bcgsc/ntCard that received 12 comments

Speed doesn't change when --threads increases?

This is on a FASTQ file with Reads 1859724 Yield 274758053 for N in $(seq 1 18); do echo threads=$N && ntcard -t $N -k 25 -p ntcard$N R1.fq.gz ; do…

12 comments

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