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Moose.C
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Moose.C
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/****************************************************************/
/* DO NOT MODIFY THIS HEADER */
/* MOOSE - Multiphysics Object Oriented Simulation Environment */
/* */
/* (c) 2010 Battelle Energy Alliance, LLC */
/* ALL RIGHTS RESERVED */
/* */
/* Prepared by Battelle Energy Alliance, LLC */
/* Under Contract No. DE-AC07-05ID14517 */
/* With the U. S. Department of Energy */
/* */
/* See COPYRIGHT for full restrictions */
/****************************************************************/
#include "libmesh/petsc_macro.h"
#include "Moose.h"
#include "Factory.h"
#include "NonlinearSystem.h"
#include "PetscSupport.h"
#include "ActionWarehouse.h"
#include "ActionFactory.h"
#include "Syntax.h"
// objects that can be created by MOOSE
// Mesh
#include "FileMesh.h"
#include "GeneratedMesh.h"
#include "TiledMesh.h"
// MeshModifiers
#include "MeshExtruder.h"
#include "SideSetsFromPoints.h"
#include "SideSetsFromNormals.h"
#include "AddExtraNodeset.h"
#include "Transform.h"
#include "SideSetsAroundSubdomain.h"
#include "SideSetsBetweenSubdomains.h"
#include "AddAllSideSetsByNormals.h"
#include "SubdomainBoundingBox.h"
#include "OrientedSubdomainBoundingBox.h"
// problems
#include "FEProblem.h"
#include "CoupledProblem.h"
// kernels
#include "TimeDerivative.h"
#include "Diffusion.h"
#include "AnisotropicDiffusion.h"
#include "CoupledForce.h"
#include "UserForcingFunction.h"
#include "BodyForce.h"
#include "Reaction.h"
#include "RealPropertyOutput.h"
#include "MassEigenKernel.h"
// bcs
#include "ConvectiveFluxBC.h"
#include "DirichletBC.h"
#include "PresetBC.h"
#include "NeumannBC.h"
#include "FunctionDirichletBC.h"
#include "FunctionPresetBC.h"
#include "FunctionNeumannBC.h"
#include "MatchedValueBC.h"
#include "VacuumBC.h"
#include "SinDirichletBC.h"
#include "SinNeumannBC.h"
#include "VectorNeumannBC.h"
#include "WeakGradientBC.h"
#include "DiffusionFluxBC.h"
#include "PostprocessorDirichletBC.h"
#include "OneDEqualValueConstraintBC.h"
// auxkernels
#include "ConstantAux.h"
#include "FunctionAux.h"
#include "NearestNodeDistanceAux.h"
#include "NearestNodeValueAux.h"
#include "PenetrationAux.h"
#include "ProcessorIDAux.h"
#include "SelfAux.h"
#include "GapValueAux.h"
#include "MaterialRealAux.h"
#include "MaterialRealVectorValueAux.h"
#include "MaterialRealTensorValueAux.h"
#include "MaterialStdVectorAux.h"
#include "DebugResidualAux.h"
#include "BoundsAux.h"
#include "SpatialUserObjectAux.h"
#include "SolutionAux.h"
#include "VectorMagnitudeAux.h"
#include "ConstantScalarAux.h"
#include "QuotientAux.h"
#include "NormalizationAux.h"
#include "VariableGradientComponent.h"
// dirac kernels
#include "ConstantPointSource.h"
// DG kernels
#include "DGDiffusion.h"
// ics
#include "ConstantIC.h"
#include "BoundingBoxIC.h"
#include "FunctionIC.h"
#include "RandomIC.h"
#include "ScalarConstantIC.h"
#include "ScalarComponentIC.h"
// executioners
#include "Steady.h"
#include "Transient.h"
#include "InversePowerMethod.h"
#include "NonlinearEigen.h"
#include "PetscTSExecutioner.h"
#include "CoupledTransientExecutioner.h"
// functions
#include "ConstantFunction.h"
#include "CompositeFunction.h"
#include "MooseParsedFunction.h"
#include "MooseParsedVectorFunction.h"
#include "MooseParsedGradFunction.h"
#include "PiecewiseConstant.h"
#include "PiecewiseLinear.h"
#include "SolutionFunction.h"
#include "PiecewiseBilinear.h"
#include "SplineFunction.h"
#include "PiecewiseMultilinear.h"
// materials
#include "GenericConstantMaterial.h"
#include "GenericFunctionMaterial.h"
// PPS
#include "AverageElementSize.h"
#include "AverageNodalVariableValue.h"
#include "NodalSum.h"
#include "ElementAverageValue.h"
#include "ElementAverageTimeDerivative.h"
#include "ElementH1Error.h"
#include "ElementH1SemiError.h"
#include "ElementIntegralVariablePostprocessor.h"
#include "ElementIntegralMaterialProperty.h"
#include "ElementL2Error.h"
#include "ElementVectorL2Error.h"
#include "EmptyPostprocessor.h"
#include "NodalVariableValue.h"
#include "NumDOFs.h"
#include "TimestepSize.h"
#include "RunTime.h"
#include "PerformanceData.h"
#include "NumElems.h"
#include "NumNodes.h"
#include "NumNonlinearIterations.h"
#include "NumLinearIterations.h"
#include "ProblemRealParameter.h"
#include "Residual.h"
#include "ScalarVariable.h"
#include "NumVars.h"
#include "NumResidualEvaluations.h"
#include "Receiver.h"
#include "SideAverageValue.h"
#include "SideFluxIntegral.h"
#include "SideFluxAverage.h"
#include "SideIntegralVariablePostprocessor.h"
#include "NodalMaxValue.h"
#include "NodalProxyMaxValue.h"
#include "PlotFunction.h"
#include "ScalarL2Error.h"
#include "ElementalVariableValue.h"
#include "ElementL2Norm.h"
#include "NodalL2Norm.h"
#include "NodalL2Error.h"
#include "TotalVariableValue.h"
#include "VolumePostprocessor.h"
#include "AreaPostprocessor.h"
#include "PointValue.h"
#include "NodalExtremeValue.h"
#include "ElementExtremeValue.h"
#include "DifferencePostprocessor.h"
#include "NumPicardIterations.h"
// vector PPS
#include "ConstantVectorPostprocessor.h"
#include "NodalValueSampler.h"
#include "SideValueSampler.h"
#include "PointValueSampler.h"
#include "LineValueSampler.h"
// user objects
#include "LayeredIntegral.h"
#include "LayeredAverage.h"
#include "LayeredSideIntegral.h"
#include "LayeredSideAverage.h"
#include "LayeredSideFluxAverage.h"
#include "NearestPointLayeredAverage.h"
#include "ElementIntegralVariableUserObject.h"
#include "NodalNormalsEvaluator.h"
#include "NodalNormalsCorner.h"
#include "NodalNormalsPreprocessor.h"
#include "SolutionUserObject.h"
#ifdef LIBMESH_HAVE_FPARSER
#include "Terminator.h"
#endif
// preconditioners
#include "PhysicsBasedPreconditioner.h"
#include "FiniteDifferencePreconditioner.h"
#include "SingleMatrixPreconditioner.h"
#include "SplitBasedPreconditioner.h"
#include "Split.h"
#include "ContactSplit.h"
#include "AddSplitAction.h"
// dampers
#include "ConstantDamper.h"
#include "MaxIncrement.h"
// DG
#include "DGDiffusion.h"
#include "DGFunctionDiffusionDirichletBC.h"
// Constraints
#include "TiedValueConstraint.h"
#include "CoupledTiedValueConstraint.h"
#include "AddBoundsVectorsAction.h"
#include "EqualValueConstraint.h"
// ScalarKernels
#include "ODETimeDerivative.h"
#include "FunctionScalarAux.h"
#include "NodalEqualValueConstraint.h"
// indicators
#include "AnalyticalIndicator.h"
#include "LaplacianJumpIndicator.h"
#include "GradientJumpIndicator.h"
// markers
#include "ErrorToleranceMarker.h"
#include "ErrorFractionMarker.h"
#include "UniformMarker.h"
#include "BoxMarker.h"
#include "ComboMarker.h"
#include "ValueThresholdMarker.h"
#include "ValueRangeMarker.h"
#include "OrientedBoxMarker.h"
// time steppers
#include "ConstantDT.h"
#include "FunctionDT.h"
#include "IterationAdaptiveDT.h"
#include "SolutionTimeAdaptiveDT.h"
#include "DT2.h"
#include "PostprocessorDT.h"
#include "AB2PredictorCorrector.h"
// time integrators
#include "SteadyState.h"
#include "ImplicitEuler.h"
#include "BDF2.h"
#include "CrankNicolson.h"
#include "ExplicitEuler.h"
#include "RungeKutta2.h"
//
#include "SimplePredictor.h"
#include "AdamsPredictor.h"
// MultiApps
#include "TransientMultiApp.h"
#include "FullSolveMultiApp.h"
#include "AutoPositionsMultiApp.h"
// Transfers
#ifdef LIBMESH_HAVE_DTK
#include "MultiAppDTKUserObjectTransfer.h"
#include "MultiAppDTKInterpolationTransfer.h"
#include "MoabTransfer.h"
#endif
#include "MultiAppPostprocessorInterpolationTransfer.h"
#include "MultiAppVariableValueSampleTransfer.h"
#include "MultiAppVariableValueSamplePostprocessorTransfer.h"
#include "MultiAppMeshFunctionTransfer.h"
#include "MultiAppUserObjectTransfer.h"
#include "MultiAppNearestNodeTransfer.h"
#include "MultiAppInterpolationTransfer.h"
#include "MultiAppPostprocessorTransfer.h"
#include "MultiAppProjectionTransfer.h"
#include "MultiAppPostprocessorToAuxScalarTransfer.h"
// Actions
#include "AddBCAction.h"
#include "AddDiracKernelAction.h"
#include "AddICAction.h"
#include "AddInitialConditionAction.h"
#include "AddKernelAction.h"
#include "AddScalarKernelAction.h"
#include "AddDGKernelAction.h"
#include "AddPeriodicBCAction.h"
#include "AddVariableAction.h"
#include "AddAuxVariableAction.h"
#include "AddPostprocessorAction.h"
#include "AddVectorPostprocessorAction.h"
#include "AddDamperAction.h"
#include "AddFunctionAction.h"
#include "CreateExecutionerAction.h"
#include "DetermineSystemType.h"
#include "SetupTimePeriodsAction.h"
#include "EmptyAction.h"
#include "InitProblemAction.h"
#include "CopyNodalVarsAction.h"
#include "SetupMeshAction.h"
#include "AddMeshModifierAction.h"
#include "SetupMeshCompleteAction.h"
#include "AddOutputAction.h"
#include "CommonOutputAction.h"
#include "AddMaterialAction.h"
#include "GlobalParamsAction.h"
#include "AdaptivityAction.h"
#include "SetupDampersAction.h"
#include "CheckIntegrityAction.h"
#include "SetupQuadratureAction.h"
#include "SetupPreconditionerAction.h"
#include "SetupDebugAction.h"
#include "SetupResidualDebugAction.h"
#include "DeprecatedBlockAction.h"
#include "AddConstraintAction.h"
#include "InitDisplacedProblemAction.h"
#include "CreateProblemAction.h"
#include "AddUserObjectAction.h"
#include "AddElementalFieldAction.h"
#include "AddIndicatorAction.h"
#include "AddMarkerAction.h"
#include "SetAdaptivityOptionsAction.h"
#include "AddFEProblemAction.h"
#include "AddCoupledVariableAction.h"
#include "AddMultiAppAction.h"
#include "AddTransferAction.h"
#include "AddNodalNormalsAction.h"
#include "SetupTimeStepperAction.h"
#include "SetupPredictorAction.h"
#include "AddMortarInterfaceAction.h"
#include "SetupPostprocessorDataAction.h"
#include "MaterialOutputAction.h"
#include "CheckOutputAction.h"
#include "SetupRecoverFileBaseAction.h"
// Outputs
#include "Exodus.h"
#include "Nemesis.h"
#include "Console.h"
#include "CSV.h"
#include "VTKOutput.h"
#include "Checkpoint.h"
#include "XDA.h"
#include "GMVOutput.h"
#include "Tecplot.h"
#include "Gnuplot.h"
#include "SolutionHistory.h"
#include "MaterialPropertyDebugOutput.h"
#include "VariableResidualNormsDebugOutput.h"
#include "TopResidualDebugOutput.h"
namespace Moose {
static bool registered = false;
void
registerObjects(Factory & factory)
{
// mesh
registerMesh(FileMesh);
registerMesh(GeneratedMesh);
registerMesh(TiledMesh);
// mesh modifiers
registerMeshModifier(MeshExtruder);
registerMeshModifier(SideSetsFromPoints);
registerMeshModifier(SideSetsFromNormals);
registerMeshModifier(AddExtraNodeset);
registerMeshModifier(Transform);
registerMeshModifier(SideSetsAroundSubdomain);
registerMeshModifier(SideSetsBetweenSubdomains);
registerMeshModifier(AddAllSideSetsByNormals);
registerMeshModifier(SubdomainBoundingBox);
registerMeshModifier(OrientedSubdomainBoundingBox);
// problems
registerProblem(FEProblem);
registerProblem(CoupledProblem);
// kernels
registerKernel(TimeDerivative);
registerKernel(Diffusion);
registerKernel(AnisotropicDiffusion);
registerKernel(CoupledForce);
registerKernel(UserForcingFunction);
registerKernel(BodyForce);
registerKernel(Reaction);
registerKernel(RealPropertyOutput);
registerKernel(MassEigenKernel);
// bcs
registerBoundaryCondition(ConvectiveFluxBC);
registerBoundaryCondition(DirichletBC);
registerBoundaryCondition(PresetBC);
registerBoundaryCondition(NeumannBC);
registerBoundaryCondition(FunctionDirichletBC);
registerBoundaryCondition(FunctionPresetBC);
registerBoundaryCondition(FunctionNeumannBC);
registerBoundaryCondition(MatchedValueBC);
registerBoundaryCondition(VacuumBC);
registerBoundaryCondition(SinDirichletBC);
registerBoundaryCondition(SinNeumannBC);
registerBoundaryCondition(VectorNeumannBC);
registerBoundaryCondition(WeakGradientBC);
registerBoundaryCondition(DiffusionFluxBC);
registerBoundaryCondition(PostprocessorDirichletBC);
registerBoundaryCondition(OneDEqualValueConstraintBC);
// dirac kernels
registerDiracKernel(ConstantPointSource);
// aux kernels
registerAux(ConstantAux);
registerAux(FunctionAux);
registerAux(NearestNodeDistanceAux);
registerAux(NearestNodeValueAux);
registerAux(PenetrationAux);
registerAux(ProcessorIDAux);
registerAux(SelfAux);
registerAux(GapValueAux);
registerAux(MaterialRealAux);
registerAux(MaterialRealVectorValueAux);
registerAux(MaterialRealTensorValueAux);
registerAux(MaterialStdVectorAux);
registerAux(DebugResidualAux);
registerAux(BoundsAux);
registerAux(SpatialUserObjectAux);
registerAux(SolutionAux);
registerAux(VectorMagnitudeAux);
registerAux(ConstantScalarAux);
registerAux(QuotientAux);
registerAux(NormalizationAux);
registerAux(FunctionScalarAux);
registerAux(VariableGradientComponent);
// Initial Conditions
registerInitialCondition(ConstantIC);
registerInitialCondition(BoundingBoxIC);
registerInitialCondition(FunctionIC);
registerInitialCondition(RandomIC);
registerInitialCondition(ScalarConstantIC);
registerInitialCondition(ScalarComponentIC);
// executioners
registerExecutioner(Steady);
registerExecutioner(Transient);
registerExecutioner(InversePowerMethod);
registerExecutioner(NonlinearEigen);
registerExecutioner(CoupledTransientExecutioner);
#if defined(LIBMESH_HAVE_PETSC) && !PETSC_VERSION_LESS_THAN(3,4,0)
#if 0 // This seems to be broken right now -- doesn't work wiith petsc >= 3.4 either
registerExecutioner(PetscTSExecutioner);
#endif
#endif
// functions
registerFunction(ConstantFunction);
registerFunction(CompositeFunction);
registerNamedFunction(MooseParsedFunction, "ParsedFunction");
registerNamedFunction(MooseParsedGradFunction, "ParsedGradFunction");
registerNamedFunction(MooseParsedVectorFunction, "ParsedVectorFunction");
registerFunction(PiecewiseConstant);
registerFunction(PiecewiseLinear);
registerDeprecatedObjectName(PiecewiseLinear, "PiecewiseLinearFile", "02/27/2014 00:00");
registerFunction(SolutionFunction);
registerFunction(PiecewiseBilinear);
registerFunction(SplineFunction);
registerFunction(PiecewiseMultilinear);
// materials
registerMaterial(GenericConstantMaterial);
registerMaterial(GenericFunctionMaterial);
// PPS
registerPostprocessor(AverageElementSize);
registerPostprocessor(AverageNodalVariableValue);
registerPostprocessor(NodalSum);
registerPostprocessor(ElementAverageValue);
registerPostprocessor(ElementAverageTimeDerivative);
registerPostprocessor(ElementH1Error);
registerPostprocessor(ElementH1SemiError);
registerPostprocessor(ElementIntegralVariablePostprocessor);
registerPostprocessor(ElementIntegralMaterialProperty);
registerPostprocessor(ElementL2Error);
registerPostprocessor(ElementVectorL2Error);
registerPostprocessor(ScalarL2Error);
registerPostprocessor(EmptyPostprocessor);
registerPostprocessor(NodalVariableValue);
registerPostprocessor(NumDOFs);
registerPostprocessor(TimestepSize);
registerPostprocessor(RunTime);
registerPostprocessor(PerformanceData);
registerPostprocessor(NumElems);
registerPostprocessor(NumNodes);
registerPostprocessor(NumNonlinearIterations);
registerPostprocessor(NumLinearIterations);
registerPostprocessor(ProblemRealParameter);
registerPostprocessor(Residual);
registerPostprocessor(ScalarVariable);
registerPostprocessor(NumVars);
registerPostprocessor(NumResidualEvaluations);
registerPostprocessor(PlotFunction);
registerPostprocessor(Receiver);
registerPostprocessor(SideAverageValue);
registerPostprocessor(SideFluxIntegral);
registerPostprocessor(SideFluxAverage);
registerPostprocessor(SideIntegralVariablePostprocessor);
registerPostprocessor(NodalMaxValue);
registerPostprocessor(NodalProxyMaxValue);
registerPostprocessor(ElementalVariableValue);
registerPostprocessor(ElementL2Norm);
registerPostprocessor(NodalL2Norm);
registerPostprocessor(NodalL2Error);
registerPostprocessor(TotalVariableValue);
registerPostprocessor(VolumePostprocessor);
registerPostprocessor(AreaPostprocessor);
registerPostprocessor(PointValue);
registerPostprocessor(NodalExtremeValue);
registerPostprocessor(ElementExtremeValue);
registerPostprocessor(DifferencePostprocessor);
registerPostprocessor(NumPicardIterations);
// vector PPS
registerVectorPostprocessor(ConstantVectorPostprocessor);
registerVectorPostprocessor(NodalValueSampler);
registerVectorPostprocessor(SideValueSampler);
registerVectorPostprocessor(PointValueSampler);
registerVectorPostprocessor(LineValueSampler);
// user objects
registerUserObject(LayeredIntegral);
registerUserObject(LayeredAverage);
registerUserObject(LayeredSideIntegral);
registerUserObject(LayeredSideAverage);
registerUserObject(LayeredSideFluxAverage);
registerUserObject(NearestPointLayeredAverage);
registerUserObject(ElementIntegralVariableUserObject);
registerUserObject(NodalNormalsPreprocessor);
registerUserObject(NodalNormalsCorner);
registerUserObject(NodalNormalsEvaluator);
registerUserObject(SolutionUserObject);
#ifdef LIBMESH_HAVE_FPARSER
registerUserObject(Terminator);
#endif
// preconditioners
registerNamedPreconditioner(PhysicsBasedPreconditioner, "PBP");
registerNamedPreconditioner(FiniteDifferencePreconditioner, "FDP");
registerNamedPreconditioner(SingleMatrixPreconditioner, "SMP");
#if defined(LIBMESH_HAVE_PETSC) && !PETSC_VERSION_LESS_THAN(3,3,0)
registerNamedPreconditioner(SplitBasedPreconditioner, "SBP");
#endif
// dampers
registerDamper(ConstantDamper);
registerDamper(MaxIncrement);
// DG
registerDGKernel(DGDiffusion);
registerBoundaryCondition(DGFunctionDiffusionDirichletBC);
// Constraints
registerConstraint(TiedValueConstraint);
registerConstraint(CoupledTiedValueConstraint);
registerConstraint(EqualValueConstraint);
// Scalar kernels
registerScalarKernel(ODETimeDerivative);
registerScalarKernel(NodalEqualValueConstraint);
// indicators
registerIndicator(AnalyticalIndicator);
registerIndicator(LaplacianJumpIndicator);
registerIndicator(GradientJumpIndicator);
// markers
registerMarker(ErrorToleranceMarker);
registerMarker(ErrorFractionMarker);
registerMarker(UniformMarker);
registerMarker(BoxMarker);
registerMarker(OrientedBoxMarker);
registerMarker(ComboMarker);
registerMarker(ValueThresholdMarker);
registerMarker(ValueRangeMarker);
// splits
registerSplit(Split);
registerSplit(ContactSplit);
// MultiApps
registerMultiApp(TransientMultiApp);
registerMultiApp(FullSolveMultiApp);
registerMultiApp(AutoPositionsMultiApp);
// time steppers
registerTimeStepper(ConstantDT);
registerTimeStepper(FunctionDT);
registerTimeStepper(IterationAdaptiveDT);
registerTimeStepper(SolutionTimeAdaptiveDT);
registerTimeStepper(DT2);
registerTimeStepper(PostprocessorDT);
registerTimeStepper(AB2PredictorCorrector);
// time integrators
registerTimeIntegrator(SteadyState);
registerTimeIntegrator(ImplicitEuler);
registerTimeIntegrator(BDF2);
registerTimeIntegrator(CrankNicolson);
registerTimeIntegrator(ExplicitEuler);
registerTimeIntegrator(RungeKutta2);
// predictors
registerPredictor(SimplePredictor);
registerPredictor(AdamsPredictor);
// Transfers
#ifdef LIBMESH_HAVE_DTK
registerTransfer(MultiAppDTKUserObjectTransfer);
registerTransfer(MultiAppDTKInterpolationTransfer);
registerTransfer(MoabTransfer);
#endif
registerTransfer(MultiAppPostprocessorInterpolationTransfer);
registerTransfer(MultiAppVariableValueSampleTransfer);
registerTransfer(MultiAppVariableValueSamplePostprocessorTransfer);
registerTransfer(MultiAppMeshFunctionTransfer);
registerTransfer(MultiAppUserObjectTransfer);
registerTransfer(MultiAppNearestNodeTransfer);
registerTransfer(MultiAppInterpolationTransfer);
registerTransfer(MultiAppPostprocessorTransfer);
registerTransfer(MultiAppProjectionTransfer);
registerTransfer(MultiAppPostprocessorToAuxScalarTransfer);
// Outputs
#ifdef LIBMESH_HAVE_EXODUS_API
registerOutput(Exodus);
#endif
#ifdef LIBMESH_HAVE_NEMESIS_API
registerOutput(Nemesis);
#endif
registerOutput(Console);
registerOutput(CSV);
#ifdef LIBMESH_HAVE_VTK
registerNamedOutput(VTKOutput, "VTK");
#endif
registerOutput(Checkpoint);
registerNamedOutput(XDA, "XDR");
registerOutput(XDA);
registerNamedOutput(GMVOutput, "GMV");
registerOutput(Tecplot);
registerOutput(Gnuplot);
registerOutput(SolutionHistory);
registerOutput(MaterialPropertyDebugOutput);
registerOutput(VariableResidualNormsDebugOutput);
registerOutput(TopResidualDebugOutput);
registered = true;
}
void
addActionTypes(Syntax & syntax)
{
/**
* The second param here indicates whether the task must be satisfied or not for a successful run.
* If set to true, then the ActionWarehouse will attempt to create "Action"s automatically if they have
* not been explicitly created by the parser or some other mechanism.
*
* Note: Many of the actions in the "Minimal Problem" section are marked as false. However, we can generally
* force creation of these "Action"s as needed by registering them to syntax that we expect to see even
* if those "Action"s don't normally pick up parameters from the input file.
*/
/**************************/
/**** Register Actions ****/
/**************************/
registerMooseObjectTask("create_problem", Problem, true);
registerMooseObjectTask("setup_executioner", Executioner, true);
// This task does not construct an object, but it needs all of the parameters that
// would normally be used to construct an object.
registerMooseObjectTask("determine_system_type", Executioner, true);
registerMooseObjectTask("setup_mesh", MooseMesh, false);
registerMooseObjectTask("add_mesh_modifier", MeshModifier, false);
registerMooseObjectTask("add_kernel", Kernel, false);
appendMooseObjectTask ("add_kernel", EigenKernel);
registerMooseObjectTask("add_material", Material, false);
registerMooseObjectTask("add_bc", BoundaryCondition, false);
registerMooseObjectTask("add_function", Function, false);
registerMooseObjectTask("add_aux_kernel", AuxKernel, false);
registerMooseObjectTask("add_elemental_field_variable", AuxKernel, false);
registerMooseObjectTask("add_coupled_variable", AuxKernel, false);
registerMooseObjectTask("add_scalar_kernel", ScalarKernel, false);
registerMooseObjectTask("add_aux_scalar_kernel", AuxScalarKernel, false);
registerMooseObjectTask("add_dirac_kernel", DiracKernel, false);
registerMooseObjectTask("add_dg_kernel", DGKernel, false);
registerMooseObjectTask("add_constraint", Constraint, false);
registerMooseObjectTask("add_ic", InitialCondition, false);
appendMooseObjectTask ("add_ic", ScalarInitialCondition);
registerMooseObjectTask("add_damper", Damper, false);
registerMooseObjectTask("setup_predictor", Predictor, false);
registerMooseObjectTask("setup_time_stepper", TimeStepper, false);
registerMooseObjectTask("add_preconditioning", MoosePreconditioner, false);
registerMooseObjectTask("add_split", Split, false);
registerMooseObjectTask("add_user_object", UserObject, false);
appendMooseObjectTask ("add_user_object", Postprocessor);
registerMooseObjectTask("add_postprocessor", Postprocessor, false);
registerMooseObjectTask("add_vector_postprocessor", VectorPostprocessor, false);
registerMooseObjectTask("add_indicator", Indicator, false);
registerMooseObjectTask("add_marker", Marker, false);
registerMooseObjectTask("add_multi_app", MultiApp, false);
registerMooseObjectTask("add_transfer", Transfer, false);
registerMooseObjectTask("add_output", Output, false);
registerTask("common_output", true);
registerTask("setup_recover_file_base", true);
registerTask("add_feproblem", false);
registerTask("add_bounds_vectors", false);
registerTask("add_periodic_bc", false);
registerTask("add_aux_variable", false);
registerTask("add_variable", false);
registerTask("prepare_mesh", false);
registerTask("setup_mesh_complete", false); // calls prepare
registerTask("init_displaced_problem", false);
registerTask("init_problem", true);
registerTask("check_copy_nodal_vars", true);
registerTask("copy_nodal_vars", true);
registerTask("copy_nodal_aux_vars", true);
registerTask("setup_postprocessor_data", false);
registerTask("setup_dampers", true);
registerTask("check_integrity", true);
registerTask("setup_quadrature", true);
/// Additional Actions
registerTask("no_action", false); // Used for Empty Action placeholders
registerTask("set_global_params", false);
registerTask("setup_time_periods", true);
registerTask("setup_adaptivity", false);
registerTask("meta_action", false);
registerTask("setup_debug", false);
registerTask("setup_residual_debug", false);
registerTask("setup_oversampling", false);
registerTask("deprecated_block", false);
registerTask("set_adaptivity_options", false);
registerTask("add_mortar_interface", false);
// Dummy Actions (useful for sync points in the dependencies)
registerTask("setup_function_complete", false);
registerTask("setup_variable_complete", false);
registerTask("ready_to_init", true);
// Output related actions
registerTask("setup_material_output", true);
registerTask("check_output", true);
/**************************/
/****** Dependencies ******/
/**************************/
/**
* The following is the default set of action dependencies for a basic MOOSE problem. The formatting
* of this string is important. Each line represents a set of dependencies that depend on the previous
* line. Items on the same line have equal weight and can be executed in any order.
*
* Additional dependencies can be inserted later inside of user applications with calls to
* ActionWarehouse::addDependency("task", "pre_req")
*/
syntax.addDependencySets(
"(meta_action)"
"(common_output)"
"(set_global_params)"
"(setup_recover_file_base)"
"(check_copy_nodal_vars)"
"(setup_mesh)"
"(prepare_mesh)"
"(add_mesh_modifier)"
"(add_mortar_interface)"
"(setup_mesh_complete)"
"(determine_system_type)"
"(create_problem)"
"(setup_executioner)"
"(setup_time_stepper)"
"(setup_predictor)"
"(add_feproblem)"
"(setup_postprocessor_data)"
"(setup_time_periods)"
"(init_displaced_problem)"
"(add_aux_variable, add_variable, add_elemental_field_variable)"
"(add_coupled_variable)"
"(setup_variable_complete)"
"(setup_quadrature)"
"(add_function)"
"(add_periodic_bc)"
"(add_user_object)"
"(setup_function_complete)"
"(setup_adaptivity)"
"(set_adaptivity_options)"
"(add_ic)"
"(add_preconditioning, add_constraint, add_split)"
"(ready_to_init)"
"(setup_dampers)"
"(setup_residual_debug)"
"(add_bounds_vectors)"
"(add_multi_app)"
"(add_transfer)"
"(copy_nodal_vars, copy_nodal_aux_vars)"
"(add_material)"
"(setup_material_output)"
"(init_problem)"
"(setup_debug)"
"(add_output)"
"(add_postprocessor)"
"(add_vector_postprocessor)"
"(add_aux_kernel, add_bc, add_damper, add_dirac_kernel, add_kernel, add_dg_kernel, add_scalar_kernel, add_aux_scalar_kernel, add_indicator, add_marker)"
"(check_output)"
"(check_integrity)"
);
}
/**
* Multiple Action class can be associated with a single input file section, in which case all associated Actions
* will be created and "acted" on when the associated input file section is seen.b *
* Example:
* "setup_mesh" <-----------> SetupMeshAction <---------
* \
* [Mesh]
* /
* "setup_mesh_complete" <---> SetupMeshCompleteAction <-
*
*
* Action classes can also be registered to act on more than one input file section for a different task
* if similar logic can work in multiple cases
*
* Example:
* "add_variable" <----- -> [Variables/ *]
* \ /
* CopyNodalVarsAction
* / \
* "add_aux_variable" <- -> [AuxVariables/ *]
*
*
* Note: Placeholder "no_action" actions must be put in places where it is possible to match an object
* with a star or a more specific parent later on. (i.e. where one needs to negate the '*' matching
* prematurely)
*/
void
registerActions(Syntax & syntax, ActionFactory & action_factory)
{
registerAction(SetupPostprocessorDataAction, "setup_postprocessor_data");
registerAction(SetupMeshAction, "setup_mesh");
registerAction(SetupMeshCompleteAction, "prepare_mesh");
registerAction(AddMeshModifierAction, "add_mesh_modifier");
registerAction(AddMortarInterfaceAction, "add_mortar_interface");
registerAction(SetupMeshCompleteAction, "setup_mesh_complete");
registerAction(AddFunctionAction, "add_function");
registerAction(CreateExecutionerAction, "setup_executioner");
registerAction(SetupTimeStepperAction, "setup_time_stepper");
registerAction(SetupTimePeriodsAction, "setup_time_periods");
registerAction(InitDisplacedProblemAction, "init_displaced_problem");
registerAction(DetermineSystemType, "determine_system_type");
registerAction(CreateProblemAction, "create_problem");
registerAction(AddOutputAction, "add_output");
registerAction(CommonOutputAction, "common_output");
registerAction(SetupRecoverFileBaseAction, "setup_recover_file_base");
registerAction(GlobalParamsAction, "set_global_params");
registerAction(SetupPredictorAction, "setup_predictor");
registerAction(MaterialOutputAction, "setup_material_output");
registerAction(CheckOutputAction, "check_output");
/// Variable/AuxVariable Actions
registerAction(AddVariableAction, "add_variable");
registerAction(AddVariableAction, "add_ic"); // initial condition shortcut syntax
registerAction(AddAuxVariableAction, "add_aux_variable");
registerAction(AddAuxVariableAction, "add_ic"); // initial condition shortcut syntax
registerAction(CopyNodalVarsAction, "check_copy_nodal_vars");
registerAction(CopyNodalVarsAction, "copy_nodal_vars");
registerAction(CopyNodalVarsAction, "copy_nodal_aux_vars");
// Initial Condition Actions
registerAction(AddICAction, "add_ic");
registerAction(AddInitialConditionAction, "add_ic");
registerAction(AddKernelAction, "add_kernel");
registerAction(AddKernelAction, "add_aux_kernel");
registerAction(AddScalarKernelAction, "add_scalar_kernel");
registerAction(AddScalarKernelAction, "add_aux_scalar_kernel");
registerAction(AddDGKernelAction, "add_dg_kernel");
registerAction(AddBCAction, "add_bc");
registerAction(EmptyAction, "no_action"); // placeholder
registerAction(AddPeriodicBCAction, "add_periodic_bc");
registerAction(AddMaterialAction, "add_material");
registerAction(AddPostprocessorAction, "add_postprocessor");
registerAction(AddVectorPostprocessorAction, "add_vector_postprocessor");
registerAction(AddDamperAction, "add_damper");
registerAction(AddSplitAction, "add_split");
registerAction(SetupPreconditionerAction, "add_preconditioning");
registerAction(SetupQuadratureAction, "setup_quadrature");
registerAction(DeprecatedBlockAction, "deprecated_block");
registerAction(AddConstraintAction, "add_constraint");
registerAction(AddUserObjectAction, "add_user_object");
registerAction(AddElementalFieldAction, "add_elemental_field_variable");
registerAction(AddIndicatorAction, "add_indicator");
registerAction(AddMarkerAction, "add_marker");
registerAction(SetAdaptivityOptionsAction, "set_adaptivity_options");
registerAction(AddNodalNormalsAction, "add_aux_variable");
registerAction(AddNodalNormalsAction, "add_postprocessor");
registerAction(AddNodalNormalsAction, "add_user_object");
#ifdef LIBMESH_ENABLE_AMR
registerAction(AdaptivityAction, "setup_adaptivity");
#endif
registerAction(AddDiracKernelAction, "add_dirac_kernel");
registerAction(SetupDebugAction, "setup_debug");
registerAction(SetupResidualDebugAction, "setup_residual_debug");
registerAction(AddBoundsVectorsAction, "add_bounds_vectors");
// NonParsedActions
registerAction(SetupDampersAction, "setup_dampers");
registerAction(EmptyAction, "ready_to_init");
registerAction(InitProblemAction, "init_problem");
registerAction(CheckIntegrityAction, "check_integrity");
// coupling
registerAction(AddFEProblemAction, "add_feproblem");
registerAction(AddCoupledVariableAction, "add_coupled_variable");
registerAction(AddMultiAppAction, "add_multi_app");
registerAction(AddTransferAction, "add_transfer");
// TODO: Why is this here?
registerTask("finish_input_file_output", false);
registerAction(EmptyAction, "finish_input_file_output");
}
void
setSolverDefaults(FEProblem & problem)
{
#ifdef LIBMESH_HAVE_PETSC
// May be a touch expensive to create a new DM every time, but probably safer to do it this way
Moose::PetscSupport::petscSetDefaults(problem);
#endif //LIBMESH_HAVE_PETSC
}
MPI_Comm
swapLibMeshComm(MPI_Comm new_comm)
{
#ifdef LIBMESH_HAVE_PETSC
MPI_Comm old_comm = PETSC_COMM_WORLD;
PETSC_COMM_WORLD = new_comm;
return old_comm;
#endif //LIBMESH_HAVE_PETSC
}
void
enableFPE(bool on)
{
if (_trap_fpe)
libMesh::enableFPE(on);
}
// Currently there are 6 exec types (See Moose.h)
const std::vector<ExecFlagType> populateExecTypes()
{