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  • University of Minnesota - Twin Cities
  • United States

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  1. neighbor_joining neighbor_joining Public

    Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.

    Python 1

  2. needleman_wunsch needleman_wunsch Public

    An algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of dynamic programming to compare biological sequences.

    Python