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Add Support for Freebayes somatic variant caller #6

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grantn5 opened this issue Jan 16, 2024 · 0 comments
Open

Add Support for Freebayes somatic variant caller #6

grantn5 opened this issue Jan 16, 2024 · 0 comments

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@grantn5
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grantn5 commented Jan 16, 2024

A commonly used NGS pipeline for variant calling is nf-core/sarek The variant callers implemented in this pipeline are Mutect2, Strekla and Freebayes. It would be nice to add support for freebayes into this package to allow for a seemless transition of variant calling into interpretation using MutScape.

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