Master: 
A powerful open source data warehouse system. InterMine allows users to integrate diverse data sources with a minimum of effort, providing powerful web-services and an elegant web-application with minimal configuration. InterMine powers some of the largest data-warehouses in the life sciences, including:
For the full list of InterMines, please see the registry
For details, please visit: InterMine Documentation
If you run an InterMine, or use one in your research, in order to improve the chance of continued funding for the project it would be appreciated if groups that use InterMine or parts of InterMine would let us know.
For a guide on getting started with InterMine, please visit: quick start tutorial
As long as you have the prerequisites installed (Java, PostgreSQL), you can get a working data-warehouse and associated web-application by running an automated bootstrap script:
# For a genomic application, with test data from Malaria
./biotestmine/setup.sh
# For the testmodel
./testmodel/setup.shThis requires that you have all the software dependencies
installed and running with the appropriate user permissions
(PostgreSQL, Java SDK). You will need to have set up usernames
and passwords for PostgreSQL first, and these can be
provided to the setup scripts as PSQL_USER.
Copyright (C) 2002-2019 FlyMine
See LICENSE file for licensing information.
This product includes software developed by the Apache Software Foundation
InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R,
Stěpán R, Sullivan J, Micklem G.
Nucleic Acids Res. 2014 Jul; 42 (Web Server issue): W468-72
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.
Bioinformatics (2012) 28 (23): 3163-3165.
See zotero for the full list of InterMine publications.