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DESCRIPTION
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DESCRIPTION
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Package: toxprofileR
Type: Package
Title: Functions for Retrieving Dynamic Toxicogenomic Fingerprints
Version: 0.3.0
date: 2018-07-23
Authors@R: person("Andreas", "Schuettler", email = "andreas.schuettler@ufz.de", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-3823-1667"))
Description: This package supplies functions to import, process and analyze time and concentration resolved Oaklabs Zebrafish microarray data retrieved after exposure to chemicals.
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews:
Imports:
mgcv (>= 1.8.24),
outliers (>= 0.14),
cowplot (>= 0.9.3),
nlme (>= 3.1.137),
pbapply (>= 1.3.4),
tictoc (>= 1.0),
kohonen (>= 3.0.5),
hydromad (>= 0.9.15),
nnet (>= 7.3.12),
data.table (>= 1.11.4),
plotly (>= 4.8.0),
plot3D (>= 1.1.1),
bbmle (>= 1.0.20),
ggpubr (>= 0.1.8),
Matrix (>= 1.2.15),
foreign (>= 0.8.71),
cluster (>= 2.0.7.1),
rpart (>= 4.1.13),
DT (>= 0.5),
limma (>= 3.34.9),
GenomicRanges (>= 1.30.3),
oligo (>= 1.42.0),
arrayQualityMetrics (>= 3.34.0),
biomaRt (>= 2.34.2),
sva (>= 3.26.0),
shinycssloaders (>= 0.2.0),
shinydashboard (>= 0.7.1)
Remotes: floybix/hydromad
RoxygenNote: 6.1.1
Suggests:
clusterProfiler (>= 3.10.0)