Merge pull request #3 from manics/docker-v1.0

Add Dockerfile

DOCKER.md

@@ -0,0 +1,33 @@
+Running Mineotaur in Docker
+===========================
+
+Clone this repository, and build the Mineotaur Docker image:
+
+    docker build -t mineotaur .
+
+Create a Mineotaur data directory, e.g. `/mineotaur-data`, containing the properties file:
+- `XXX.input`
+
+If the feature data is not provided by OMERO then also create the sample and label files:
+- `XXX_sample.tsv`
+- `XXX_labels.tsv`
+
+Run the Docker image to create the Mineotaur data. The Mineotaur data directory must be mounted under `/mineotaur`, generated data will be written to a subdirectory in this directory named after the input screen:
+
+    docker run -v /mineotaur-data:/mineotaur mineotaur -import XXX.input
+
+If the feature data is not provided by OMERO:
+
+    docker run -v /mineotaur-data:/mineotaur mineotaur \
+        -import XXX.input XXX_sample.tsv XXX_labels.tsv
+
+You should see several log messages, ending with
+
+    INFO: Database generation finished. Start Mineotaur instance with -start YYY
+
+where `YYY` is the name of the analysed screen.
+Run the Mineotaur web application, substituting `YYY`:
+
+    docker run -v /mineotaur-data:/mineotaur --start YYY
+
+Mineotaur should be listening on port 8080 of the container.

Dockerfile

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+FROM centos:centos7
+MAINTAINER ome-devel@lists.openmicroscopy.org.uk
+
+ENV MAVEN_VERSION=3.0.5
+
+RUN yum install -y java-1.8.0-openjdk-devel tar
+
+# Don't use maven from repos because it pulls in Java 7
+RUN curl -L -o apache-maven-$MAVEN_VERSION-bin.tar.gz \
+	http://mirror.olnevhost.net/pub/apache/maven/maven-3/$MAVEN_VERSION/binaries/apache-maven-$MAVEN_VERSION-bin.tar.gz && \
+	tar -zxvf apache-maven-$MAVEN_VERSION-bin.tar.gz && \
+	mv apache-maven-$MAVEN_VERSION /opt/maven && \
+	rm apache-maven-$MAVEN_VERSION-bin.tar.gz
+
+RUN useradd build
+COPY . /home/build/src/
+RUN chown -R build:build /home/build/src
+
+USER build
+WORKDIR /home/build/src
+RUN /opt/maven/bin/mvn install
+
+WORKDIR /mineotaur
+ENTRYPOINT ["java", "-jar", "/home/build/src/target/Mineotaur-1.0.1.jar"]
+CMD ["-help"]
+