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De novo assemble viral contigs from FASTQ files in human host

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Name		Name	Last commit message	Last commit date
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README.md		README.md
clean_human_host.sh		clean_human_host.sh
fastp_trimming.sh		fastp_trimming.sh
spades_denovo_assembly.sh		spades_denovo_assembly.sh

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CMVAssembler

De novo assemble viral contigs from FASTQ files in human host

Required software:

Bowtie2 --> http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
SPAdes assembler --> https://cab.spbu.ru/files/release3.15.3/manual.html
fastp quality trimming software --> https://github.com/OpenGene/fastp

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De novo assemble viral contigs from FASTQ files in human host

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