DRILL-6642: Update protocol-buffers version

1. Updated protobuf to version 3.6.1
2. Added protobuf to the root pom dependency management
3. Added classes BoundedByteString and LiteralByteString for compatibility with HBase
4. Added ProtobufPatcher to provide compatibility with MapR-DB and HBase
closes #1639

.travis.yml

@@ -25,15 +25,26 @@ jdk:
 cache:
   directories:
   - "$HOME/.m2"
+  - "$HOME/protobuf"
 before_install:
   - git fetch --unshallow
   # Install libraries required for protobuf generation
   - |
     if [ $PHASE = "build_checkstyle_protobuf" ]; then \
-      sudo apt-get install -y libboost-all-dev libzookeeper-mt-dev libsasl2-dev cmake libcppunit-dev && \
-      pushd .. && wget https://github.com/google/protobuf/releases/download/v2.5.0/protobuf-2.5.0.tar.gz && \
-      tar -xzvf protobuf-2.5.0.tar.gz && \
-      pushd protobuf-2.5.0 && ./configure --prefix=/usr && make && sudo make install && popd && popd; \
+      sudo apt-get install -y libboost-all-dev libzookeeper-mt-dev libsasl2-dev cmake libcppunit-dev checkinstall && \
+      pushd .. && \
+      if [ -f $HOME/protobuf/protobuf_3.6.1* ]; then \
+        sudo dpkg -i $HOME/protobuf/protobuf_3.6.1*; \
+      else \
+        wget https://github.com/protocolbuffers/protobuf/releases/download/v3.6.1/protobuf-java-3.6.1.zip && \
+        unzip protobuf-java-3.6.1.zip && pushd protobuf-3.6.1 && \
+        ./configure && sudo make && sudo checkinstall -y && \
+        if [ ! -d $HOME/protobuf ]; then \
+          mkdir -p $HOME/protobuf; \
+        fi && \
+        mv protobuf_3.6.1* $HOME/protobuf/ && popd; \
+      fi && \
+      sudo ldconfig && popd; \
     fi
 install:
   # For tests phase runs unit tests

contrib/native/client/readme.linux

@@ -27,15 +27,15 @@ Install Prerequisites
 1) CMAKE 3.0
     $> yum install cmake3
 
-2.1) Download protobuf 2.5 from :
-    http://rpm.pbone.net/index.php3/stat/4/idpl/23552166/dir/centos_6/com/protobuf-2.5.0-16.1.x86_64.rpm.html
-    http://rpm.pbone.net/index.php3/stat/4/idpl/23552167/dir/centos_6/com/protobuf-compiler-2.5.0-16.1.x86_64.rpm.html
-    http://rpm.pbone.net/index.php3/stat/4/idpl/23552169/dir/centos_6/com/protobuf-devel-2.5.0-16.1.x86_64.rpm.html
+2.1) Download protobuf 3.6 from :
+    https://github.com/protocolbuffers/protobuf/releases/download/v3.6.1/protobuf-java-3.6.1.zip
 
 2.2) Install Protobufs
-    $> sudo yum install protobuf
-    $> sudo yum install protobuf-compiler
-    $> sudo yum install protobuf-devel
+    $> unzip protobuf-java-3.6.1.zip
+    $> cd protobuf-3.6.1
+    $> ./configure
+    $> sudo make
+    $> sudo make install
 
 3)
 3.1) Install Zookeeper prerequisites

contrib/native/client/readme.macos

@@ -36,7 +36,7 @@ Install Prerequisites
 2.0) Install cppunit 
   $> brew install cppunit 
 
-2.1) Install protobuf 2.5.0 (or higher)
+2.1) Install protobuf 3.6.1 (or higher)
   $> brew install protobuf
 
 2.2) Install zookeeper

contrib/native/client/readme.win.txt

@@ -118,8 +118,8 @@ Windows platforms should be more or less similar.
         iii) If you do not have the 64 bit assembler installed, boost-context does not
         build. It is safe to ignore it as boost-context is not needed for Drill
 
-2.2 Protobuf (2.5.0)
-    Get protobuf from here: https://protobuf.googlecode.com/files/protobuf-2.5.0.zip
+2.2 Protobuf (3.6.1)
+    Get protobuf from here: https://github.com/protocolbuffers/protobuf/releases/download/v3.6.1/protoc-3.6.1-win32.zip
 
     a) Protobuf builds static libraries
     b) In Visual Studio, open <PROTOBUF_HOME>/vsprojects/protobuf.sln. The IDE may