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Merge pull request #2054 from tilakpatidar/postgresql_source
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54
...-sql/src/main/java/org/apache/gobblin/source/extractor/extract/jdbc/PostgresqlSource.java
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/* | ||
* Licensed to the Apache Software Foundation (ASF) under one or more | ||
* contributor license agreements. See the NOTICE file distributed with | ||
* this work for additional information regarding copyright ownership. | ||
* The ASF licenses this file to You under the Apache License, Version 2.0 | ||
* (the "License"); you may not use this file except in compliance with | ||
* the License. You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
package org.apache.gobblin.source.extractor.extract.jdbc; | ||
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import java.io.IOException; | ||
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import org.apache.gobblin.configuration.WorkUnitState; | ||
import org.apache.gobblin.source.extractor.Extractor; | ||
import org.apache.gobblin.source.extractor.exception.ExtractPrepareException; | ||
import org.apache.gobblin.source.extractor.extract.QueryBasedSource; | ||
import org.apache.gobblin.source.jdbc.PostgresqlExtractor; | ||
import org.slf4j.Logger; | ||
import org.slf4j.LoggerFactory; | ||
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import com.google.gson.JsonArray; | ||
import com.google.gson.JsonElement; | ||
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/** | ||
* An implementation of postgresql source to get work units | ||
* | ||
* @author tilakpatidar | ||
*/ | ||
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public class PostgresqlSource extends QueryBasedSource<JsonArray, JsonElement> { | ||
private static final Logger LOG = LoggerFactory.getLogger(PostgresqlSource.class); | ||
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@Override | ||
public Extractor<JsonArray, JsonElement> getExtractor(WorkUnitState state) | ||
throws IOException { | ||
Extractor<JsonArray, JsonElement> extractor; | ||
try { | ||
extractor = new PostgresqlExtractor(state).build(); | ||
} catch (ExtractPrepareException e) { | ||
LOG.error("Failed to prepare extractor: error - " + e.getMessage()); | ||
throw new IOException(e); | ||
} | ||
return extractor; | ||
} | ||
} |
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...modules/gobblin-sql/src/main/java/org/apache/gobblin/source/jdbc/PostgresqlExtractor.java
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/* | ||
* Licensed to the Apache Software Foundation (ASF) under one or more | ||
* contributor license agreements. See the NOTICE file distributed with | ||
* this work for additional information regarding copyright ownership. | ||
* The ASF licenses this file to You under the Apache License, Version 2.0 | ||
* (the "License"); you may not use this file except in compliance with | ||
* the License. You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
package org.apache.gobblin.source.jdbc; | ||
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import java.io.IOException; | ||
import java.util.ArrayList; | ||
import java.util.Arrays; | ||
import java.util.Iterator; | ||
import java.util.List; | ||
import java.util.Map; | ||
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import org.apache.commons.lang3.StringUtils; | ||
import org.apache.gobblin.configuration.ConfigurationKeys; | ||
import org.apache.gobblin.configuration.WorkUnitState; | ||
import org.apache.gobblin.source.extractor.DataRecordException; | ||
import org.apache.gobblin.source.extractor.exception.HighWatermarkException; | ||
import org.apache.gobblin.source.extractor.exception.RecordCountException; | ||
import org.apache.gobblin.source.extractor.exception.SchemaException; | ||
import org.apache.gobblin.source.extractor.extract.Command; | ||
import org.apache.gobblin.source.extractor.utils.Utils; | ||
import org.apache.gobblin.source.extractor.watermark.Predicate; | ||
import org.apache.gobblin.source.extractor.watermark.WatermarkType; | ||
import org.apache.gobblin.source.workunit.WorkUnit; | ||
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import com.google.common.collect.ImmutableMap; | ||
import com.google.gson.JsonElement; | ||
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import lombok.extern.slf4j.Slf4j; | ||
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@Slf4j | ||
public class PostgresqlExtractor extends JdbcExtractor { | ||
private static final String POSTGRES_TIMESTAMP_FORMAT = "yyyy-MM-dd HH:mm:ss"; | ||
private static final String POSTGRES_DATE_FORMAT = "yyyy-MM-dd"; | ||
private static final String POSTGRES_HOUR_FORMAT = "HH"; | ||
private static final long SAMPLERECORDCOUNT = -1; | ||
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public PostgresqlExtractor(WorkUnitState workUnitState) { | ||
super(workUnitState); | ||
} | ||
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@Override | ||
public String getHourPredicateCondition(String column, long value, String valueFormat, String operator) { | ||
log.debug("Getting hour predicate for Postgres"); | ||
String formattedvalue = Utils.toDateTimeFormat(Long.toString(value), valueFormat, POSTGRES_HOUR_FORMAT); | ||
return Utils.getCoalesceColumnNames(column) + " " + operator + " '" + formattedvalue + "'"; | ||
} | ||
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@Override | ||
public String getDatePredicateCondition(String column, long value, String valueFormat, String operator) { | ||
log.debug("Getting date predicate for Postgres"); | ||
String formattedvalue = Utils.toDateTimeFormat(Long.toString(value), valueFormat, POSTGRES_DATE_FORMAT); | ||
return Utils.getCoalesceColumnNames(column) + " " + operator + " '" + formattedvalue + "'"; | ||
} | ||
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@Override | ||
public String getTimestampPredicateCondition(String column, long value, String valueFormat, String operator) { | ||
log.debug("Getting timestamp predicate for Postgres"); | ||
String formattedvalue = Utils.toDateTimeFormat(Long.toString(value), valueFormat, POSTGRES_TIMESTAMP_FORMAT); | ||
return Utils.getCoalesceColumnNames(column) + " " + operator + " '" + formattedvalue + "'"; | ||
} | ||
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@Override | ||
public List<Command> getSchemaMetadata(String schema, String entity) | ||
throws SchemaException { | ||
log.debug("Build query to get schema"); | ||
List<Command> commands = new ArrayList<>(); | ||
List<String> queryParams = Arrays.asList(entity, schema); | ||
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String metadataSql = "select col.column_name, col.data_type, " | ||
+ "case when CHARACTER_OCTET_LENGTH is null then 0 else 0 end as length, " | ||
+ "case when NUMERIC_PRECISION is null then 0 else NUMERIC_PRECISION end as precesion, " | ||
+ "case when NUMERIC_SCALE is null then 0 else NUMERIC_SCALE end as scale, " | ||
+ "case when is_nullable='NO' then 'false' else 'true' end as nullable, '' as format, " + "'' as comment " | ||
+ "from information_schema.COLUMNS col " | ||
+ "WHERE upper(col.table_name)=upper(?) AND upper(col.table_schema)=upper(?) " | ||
+ "order by col.ORDINAL_POSITION"; | ||
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commands.add(getCommand(metadataSql, JdbcCommand.JdbcCommandType.QUERY)); | ||
commands.add(getCommand(queryParams, JdbcCommand.JdbcCommandType.QUERYPARAMS)); | ||
return commands; | ||
} | ||
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@Override | ||
public List<Command> getHighWatermarkMetadata(String schema, String entity, String watermarkColumn, | ||
List<Predicate> predicateList) | ||
throws HighWatermarkException { | ||
log.debug("Build query to get high watermark"); | ||
List<Command> commands = new ArrayList<>(); | ||
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String columnProjection = "max(" + Utils.getCoalesceColumnNames(watermarkColumn) + ")"; | ||
String watermarkFilter = this.concatPredicates(predicateList); | ||
String query = this.getExtractSql(); | ||
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if (StringUtils.isBlank(watermarkFilter)) { | ||
watermarkFilter = "1=1"; | ||
} | ||
query = query.replace(this.getOutputColumnProjection(), columnProjection) | ||
.replace(ConfigurationKeys.DEFAULT_SOURCE_QUERYBASED_WATERMARK_PREDICATE_SYMBOL, watermarkFilter); | ||
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commands.add(getCommand(query, JdbcCommand.JdbcCommandType.QUERY)); | ||
return commands; | ||
} | ||
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@Override | ||
public List<Command> getCountMetadata(String schema, String entity, WorkUnit workUnit, List<Predicate> predicateList) | ||
throws RecordCountException { | ||
log.debug("Build query to get source record count"); | ||
List<Command> commands = new ArrayList<>(); | ||
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String columnProjection = "COUNT(1)"; | ||
String watermarkFilter = this.concatPredicates(predicateList); | ||
String query = this.getExtractSql(); | ||
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if (StringUtils.isBlank(watermarkFilter)) { | ||
watermarkFilter = "1=1"; | ||
} | ||
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query = query.replace(this.getOutputColumnProjection(), columnProjection) | ||
.replace(ConfigurationKeys.DEFAULT_SOURCE_QUERYBASED_WATERMARK_PREDICATE_SYMBOL, watermarkFilter); | ||
String sampleFilter = this.constructSampleClause(); | ||
query = query + sampleFilter; | ||
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if (!StringUtils.isEmpty(sampleFilter)) { | ||
query = "SELECT COUNT(1) FROM (" + query.replace(" COUNT(1) ", " 1 ") + ")temp"; | ||
} | ||
commands.add(getCommand(query, JdbcCommand.JdbcCommandType.QUERY)); | ||
return commands; | ||
} | ||
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@Override | ||
public List<Command> getDataMetadata(String schema, String entity, WorkUnit workUnit, List<Predicate> predicateList) | ||
throws DataRecordException { | ||
log.debug("Build query to extract data"); | ||
List<Command> commands = new ArrayList<>(); | ||
int fetchsize = this.workUnitState.getPropAsInt(ConfigurationKeys.SOURCE_QUERYBASED_JDBC_RESULTSET_FETCH_SIZE, | ||
ConfigurationKeys.DEFAULT_SOURCE_QUERYBASED_JDBC_RESULTSET_FETCH_SIZE); | ||
String watermarkFilter = this.concatPredicates(predicateList); | ||
String query = this.getExtractSql(); | ||
if (StringUtils.isBlank(watermarkFilter)) { | ||
watermarkFilter = "1=1"; | ||
} | ||
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query = query.replace(ConfigurationKeys.DEFAULT_SOURCE_QUERYBASED_WATERMARK_PREDICATE_SYMBOL, watermarkFilter); | ||
String sampleFilter = this.constructSampleClause(); | ||
query = query + sampleFilter; | ||
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commands.add(getCommand(query, JdbcCommand.JdbcCommandType.QUERY)); | ||
commands.add(getCommand(fetchsize, JdbcCommand.JdbcCommandType.FETCHSIZE)); | ||
return commands; | ||
} | ||
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@Override | ||
public String getConnectionUrl() { | ||
String host = this.workUnitState.getProp(ConfigurationKeys.SOURCE_CONN_HOST_NAME); | ||
String port = this.workUnitState.getProp(ConfigurationKeys.SOURCE_CONN_PORT); | ||
String database = this.workUnitState.getProp(ConfigurationKeys.SOURCE_QUERYBASED_SCHEMA); | ||
return "jdbc:postgresql://" + host.trim() + ":" + port + "/" + database.trim(); | ||
} | ||
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/** {@inheritdoc} */ | ||
@Override | ||
protected boolean convertBitToBoolean() { | ||
return false; | ||
} | ||
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@Override | ||
public Map<String, String> getDataTypeMap() { | ||
Map<String, String> dataTypeMap = | ||
ImmutableMap.<String, String>builder().put("tinyint", "int").put("smallint", "int").put("mediumint", "int") | ||
.put("int", "int").put("bigint", "long").put("float", "float").put("double", "double") | ||
.put("decimal", "double").put("numeric", "double").put("date", "date").put("timestamp", "timestamp") | ||
.put("datetime", "timestamp").put("time", "time").put("char", "string").put("varchar", "string") | ||
.put("varbinary", "string").put("text", "string").put("tinytext", "string").put("mediumtext", "string") | ||
.put("longtext", "string").put("blob", "string").put("tinyblob", "string").put("mediumblob", "string") | ||
.put("longblob", "string").put("enum", "string").build(); | ||
return dataTypeMap; | ||
} | ||
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@Override | ||
public String getWatermarkSourceFormat(WatermarkType watermarkType) { | ||
String columnFormat = null; | ||
switch (watermarkType) { | ||
case TIMESTAMP: | ||
columnFormat = "yyyy-MM-dd HH:mm:ss"; | ||
break; | ||
case DATE: | ||
columnFormat = "yyyy-MM-dd"; | ||
break; | ||
default: | ||
log.error("Watermark type " + watermarkType.toString() + " not recognized"); | ||
} | ||
return columnFormat; | ||
} | ||
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@Override | ||
public long exractSampleRecordCountFromQuery(String query) { | ||
if (StringUtils.isBlank(query)) { | ||
return SAMPLERECORDCOUNT; | ||
} | ||
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long recordcount = SAMPLERECORDCOUNT; | ||
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String limit = null; | ||
String inputQuery = query.toLowerCase(); | ||
int limitIndex = inputQuery.indexOf(" limit "); | ||
if (limitIndex > 0) { | ||
limit = query.substring(limitIndex + 7).trim(); | ||
} | ||
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if (StringUtils.isNotBlank(limit)) { | ||
try { | ||
recordcount = Long.parseLong(limit); | ||
} catch (Exception e) { | ||
log.error("Ignoring incorrct limit value in input query:" + limit); | ||
} | ||
} | ||
return recordcount; | ||
} | ||
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@Override | ||
public String removeSampleClauseFromQuery(String query) { | ||
if (StringUtils.isBlank(query)) { | ||
return null; | ||
} | ||
String limitString = ""; | ||
String inputQuery = query.toLowerCase(); | ||
int limitIndex = inputQuery.indexOf(" limit"); | ||
if (limitIndex > 0) { | ||
limitString = query.substring(limitIndex); | ||
} | ||
if (inputQuery.contains(" where ")) { | ||
String newQuery = query.replace(limitString, " AND 1=1"); | ||
if (newQuery.toLowerCase().contains(" where and 1=1")) { | ||
return query.replace(limitString, " 1=1"); | ||
} | ||
return newQuery; | ||
} | ||
return query.replace(limitString, " where 1=1"); | ||
} | ||
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@Override | ||
public String constructSampleClause() { | ||
long sampleRowCount = this.getSampleRecordCount(); | ||
if (sampleRowCount >= 0) { | ||
return " limit " + sampleRowCount; | ||
} | ||
return ""; | ||
} | ||
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@Override | ||
public String getLeftDelimitedIdentifier() { | ||
return this.enableDelimitedIdentifier ? "`" : ""; | ||
} | ||
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@Override | ||
public String getRightDelimitedIdentifier() { | ||
return this.enableDelimitedIdentifier ? "`" : ""; | ||
} | ||
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@Override | ||
public Iterator<JsonElement> getRecordSetFromSourceApi(String schema, String entity, WorkUnit workUnit, | ||
List<Predicate> predicateList) | ||
throws IOException { | ||
return null; | ||
} | ||
} |
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