Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[SPARK-11965] [ML] [Doc] Update user guide for RFormula feature interactions #10222

Closed
wants to merge 8 commits into from
Closed
Show file tree
Hide file tree
Changes from 7 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
20 changes: 19 additions & 1 deletion docs/ml-features.md
Original file line number Diff line number Diff line change
Expand Up @@ -2036,7 +2036,25 @@ System.out.println(output.select("userFeatures", "features").first());

## RFormula

`RFormula` selects columns specified by an [R model formula](https://stat.ethz.ch/R-manual/R-devel/library/stats/html/formula.html). It produces a vector column of features and a double column of labels. Like when formulas are used in R for linear regression, string input columns will be one-hot encoded, and numeric columns will be cast to doubles. If not already present in the DataFrame, the output label column will be created from the specified response variable in the formula.
`RFormula` selects columns specified by an [R model formula](https://stat.ethz.ch/R-manual/R-devel/library/stats/html/formula.html).
Currently we support a limited subset of the R operators, including '~', '.', ':', '+', and '-'.
The basic operators are:

* `~` separate target and terms
* `+` concat terms, "+ 0" means removing intercept
* `-` remove a term, "- 1" means removing intercept
* `:` interaction (multiplication for numeric values, or binarized categorical values)
* `.` all columns except target

Suppose `a` and `b` are double columns, we use the following simple examples to illustrate the effect of `RFormula`:

* `y ~ a + b` means model `y ~ w0 + w1 * a + w2 * b` where `w0` is the intercept and `w1, w2` are coefficients.
* `y ~ a + b + a:b - 1` means model `y ~ w1 * a + w2 * b + w3 * a * b` where `w1, w2, w3` are coefficients.

`RFormula` produces a vector column of features and a double or string column of label.
Like when formulas are used in R for linear regression, string input columns will be one-hot encoded, and numeric columns will be cast to doubles.
If the label column is of type string, it will be first transformed to double with `StringIndexer`.
If the label column does not exist in the DataFrame, the output label column will be created from the specified response variable in the formula.

**Examples**

Expand Down
22 changes: 22 additions & 0 deletions mllib/src/main/scala/org/apache/spark/ml/feature/RFormula.scala
Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,28 @@ private[feature] trait RFormulaBase extends HasFeaturesCol with HasLabelCol {
* Implements the transforms required for fitting a dataset against an R model formula. Currently
* we support a limited subset of the R operators, including '~', '.', ':', '+', and '-'. Also see
* the R formula docs here: http://stat.ethz.ch/R-manual/R-patched/library/stats/html/formula.html
*
* The basic operators are:
*
* `~` separate target and terms
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is not the correct ScalaDoc syntax for a list. See https://wiki.scala-lang.org/display/SW/Syntax. You can run build/sbt mllib/doc to check the generated html API doc.

* `+` concat terms, "+ 0" means removing intercept
* `-` remove a term, "- 1" means removing intercept
* `:` interaction (multiplication for numeric values, or binarized categorical values)
* `.` all columns except target
*
* Suppose `a` and `b` are double columns, we use the following simple examples
* to illustrate the effect of `RFormula`:
* `y ~ a + b` means model `y ~ w0 + w1 * a + w2 * b` where `w0` is the intercept and `w1, w2`
* are coefficients.
* `y ~ a + b + a:b - 1` means model `y ~ w1 * a + w2 * b + w3 * a * b` where `w1, w2, w3`
* are coefficients.
*
* RFormula produces a vector column of features and a double or string column of label.
* Like when formulas are used in R for linear regression, string input columns will be one-hot
* encoded, and numeric columns will be cast to doubles.
* If the label column is of type string, it will be first transformed to double with
* `StringIndexer`. If the label column does not exist in the DataFrame, the output label column
* will be created from the specified response variable in the formula.
*/
@Experimental
class RFormula(override val uid: String) extends Estimator[RFormulaModel] with RFormulaBase {
Expand Down