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Applied Systems Biology - HKI Jena, Germany

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  1. jipipe jipipe Public

    Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem

    Java 9 1

  2. Dynamic_SPHARM Dynamic_SPHARM Public

    Software for dynamic spherical harmonic analysis

    Python 7

  3. DeconvTest DeconvTest Public

    A python-based simulation framework that allows the user to quantify and compare the performance of different deconvolution methods.

    Jupyter Notebook 5 2

  4. HelperLib HelperLib Public

    Helper functions for working with files and parallel processing

    Python 2 1

  5. misa-framework misa-framework Public

    Website & downloads repository of MISA++

    HTML 2 2

  6. amit amit Public

    This framework allows the segmentation, classification and tracking of immune cells such as PMNs or macrophages and fungal cells in migration and confrontation assays

    C++ 2 1


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