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S. aureus - A. baumannii Co-infections

Repository Structure

  • Bacterial_CoInfection_Script.py: This file is used to run the model simulations and to fit the model to the experimental data.

  • coInfectionModel_functions.py: The file contains all functions used in Bacterial_CoInfection_Script.py.

  • json_input_configs: This folder contains all json files that were used in the study. The json files include all parameters necessary to run the simulations and the parameter estimation.

Installation

  • Clone the repository: git clone [repository-url]

Run

  • python3 Bacterial_CoInfection_Script.py /json_input_configs/[json-file-name].json

License

This project is licensed under BSD - see the LICENSE file for details.