MICCAI-educational-challenge-2020

This repository contains the supports for a tutorial to perform AD Classification using Clinica.

When cloning remember to include the submodules:

git submodule update --init --recursive

Jupyter-book is automatically deployed here: https://aramislab.paris.inria.fr/clinicadl/tuto/intro.html

When Notebooks-AD-DL is updated, type:

git submodule update --remote

to update the Jupyter-book.

To run locally, please install the necessary packages inside a conda environment:

conda create -y -n clinicadl_tuto python=3.7
conda activate clinicadl_tuto
pip install jupyterlab
pip install clinicadl==0.2.1

Then, you can clone the repository containing this tutorial and lauch the notebooks from inside:

git clone git@github.com:aramis-lab/MICCAI-educational-challenge-2020.git
cd ./Notebooks-AD-DL
jupyter notebook