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Clinica 0.4.1 - Deeplearning-prepare-data (for pet-linear output), converters updates and some minor fixes

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@omar-rifai omar-rifai released this 12 May 15:22
· 698 commits to dev since this release

Added

  • [deeplearning-prepare-data]: Add option to run pipeline with pet-linear outputs

Changed

  • [Oasis-to-bids]: Remove FSL library dependency for OASIS-to-bids conversion.
  • [Clinica]: Replace exception by warning when CAPs folder not recognized.
  • [AIBL-to-bids]: Center output nifti files of AIBL.
  • [AIBL-to-bids]: Extracts DICOM metadata in JSON files.
  • [ADNI-to-bids]: Update image selection to always consider non-processed (original) images
  • [merge-tsv]: Fetch sub-cortical volumes generated by t1-freesurfer pipelines and JSON
    files (if exists).

Fixed

  • [pet-surface]: Verify SPM12 installation when running pipeline
  • [docs]: Update instruction to install some third party software