Pre CRAN v0.1.6 p1

aravind-j · May 22, 2023 · d91f21c · d91f21c
1 parent fed0e9c
commit d91f21c
Show file tree

Hide file tree

Showing 10 changed files with 203 additions and 193 deletions.
diff --git a/CITATION.cff b/CITATION.cff
@@ -10,7 +10,7 @@ license:
 - GPL-2.0-only
 - GPL-3.0-only
 title: 'augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs'
-version: 0.1.5.9000
+version: 0.1.6
 abstract: Functions for analysis of data generated from experiments in augmented randomised
   complete block design according to Federer, W.T. (1961) <doi:10.2307/2527837>. Computes
   analysis of variance, adjusted means, descriptive statistics, genetic variability
@@ -50,7 +50,7 @@ preferred-citation:
     email: vikender.kaur@icar.gov.in
   year: '2023'
   notes:
-  - R package version 0.1.5.9000
+  - R package version 0.1.6
   - https://aravind-j.github.io/augmentedRCBD/
   - https://cran.r-project.org/package=augmentedRCBD
 repository: https://CRAN.R-project.org/package=augmentedRCBD

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: augmentedRCBD
 Title: Analysis of Augmented Randomised Complete Block Designs
-Version: 0.1.5.9000
+Version: 0.1.6
 Authors@R: c(
     person(given = "J.", family = "Aravind",
            email = "j.aravind@icar.gov.in",

diff --git a/README.html b/README.html
diff --git a/README.md b/README.md
@@ -112,7 +112,7 @@
 
 ## `augmentedRCBD`: Analysis of Augmented Randomised Complete Block Designs <img src="https://raw.githubusercontent.com/aravind-j/augmentedRCBD/master/inst/extdata/augmentedRCBD.png" align="right" alt="logo" width="173" height = "200" style = "border: none; float: right;">
 
-###### Version : [0.1.5.9000](https://aravind-j.github.io/augmentedRCBD/articles/Data_Analysis_with_augmentedRCBD.html#install); Copyright (C) 2015-2023: [ICAR-NBPGR](http://www.nbpgr.ernet.in/); License: [GPL-2\|GPL-3](https://www.r-project.org/Licenses/)
+###### Version : [0.1.6](https://aravind-j.github.io/augmentedRCBD/articles/Data_Analysis_with_augmentedRCBD.html#install); Copyright (C) 2015-2023: [ICAR-NBPGR](http://www.nbpgr.ernet.in/); License: [GPL-2\|GPL-3](https://www.r-project.org/Licenses/)
 
 ##### *Aravind, J.<sup>1</sup>, Mukesh Sankar, S.<sup>2</sup>, Wankhede, D. P.<sup>3</sup>, and Kaur, V.<sup>4</sup>*
 
@@ -142,7 +142,7 @@ Size](https://img.shields.io/github/languages/code-size/aravind-j/augmentedRCBD.
 [![Project Status:
 WIP](https://www.repostatus.org/badges/latest/inactive.svg)](https://www.repostatus.org/#inactive)
 [![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
-[![Last-changedate](https://img.shields.io/badge/last%20change-2023--05--22-yellowgreen.svg)](https://github.com/aravind-j/augmentedRCBD)
+[![Last-changedate](https://img.shields.io/badge/last%20change-2023--05--23-yellowgreen.svg)](https://github.com/aravind-j/augmentedRCBD)
 [![Zenodo
 DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1310011.svg)](https://doi.org/10.5281/zenodo.1310011)
 [![Website -
@@ -351,7 +351,7 @@ citation("augmentedRCBD")
     To cite the R package 'augmentedRCBD' in publications use:
 
       Aravind, J., Mukesh Sankar, S., Wankhede, D. P., and Kaur, V. (2023).  augmentedRCBD: Analysis of Augmented Randomised
-      Complete Block Designs. R package version 0.1.5.9000,
+      Complete Block Designs. R package version 0.1.6,
       https://aravind-j.github.io/augmentedRCBD/https://cran.r-project.org/package=augmentedRCBD.
 
     A BibTeX entry for LaTeX users is
@@ -360,7 +360,7 @@ citation("augmentedRCBD")
         title = {augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs},
         author = {J. Aravind and S. {Mukesh Sankar} and Dhammaprakash Pandhari Wankhede and Vikender Kaur},
         year = {2023},
-        note = {R package version 0.1.5.9000},
+        note = {R package version 0.1.6},
         note = {https://aravind-j.github.io/augmentedRCBD/},
         note = {https://cran.r-project.org/package=augmentedRCBD},
       }

diff --git a/augmentedRCBD.pdf b/augmentedRCBD.pdf
diff --git a/codemeta.json b/codemeta.json
@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/aravind-j/augmentedRCBD",
   "issueTracker": "https://github.com/aravind-j/augmentedRCBD/issues",
   "license": "https://spdx.org/licenses/GPL-2.0",
-  "version": "0.1.5.9000",
+  "version": "0.1.6",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -383,7 +383,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "1640.471KB",
+  "fileSize": "1659.643KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -416,7 +416,7 @@
         }
       ],
       "name": "augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs",
-      "description": ["R package version 0.1.5.9000", "https://aravind-j.github.io/augmentedRCBD/", "https://cran.r-project.org/package=augmentedRCBD"]
+      "description": ["R package version 0.1.6", "https://aravind-j.github.io/augmentedRCBD/", "https://cran.r-project.org/package=augmentedRCBD"]
     }
   ],
   "readme": "https://github.com/aravind-j/augmentedRCBD/blob/master/README.md",

diff --git a/cran-comments-archive.md b/cran-comments-archive.md
@@ -0,0 +1,180 @@
+# Version 0.1.5 - First submission
+
+* Fixed `'LazyData' is specified without a 'data' directory` NOTE (as there is no `/data` folder).
+* Tests show the following invalid doi/url which is for an article hosted in JSTOR. The doi is working on multiple browsers and networks on my end. Kindly advise.
+>   Found the following (possibly) invalid URLs:
+  >     URL: https://doi.org/10.2307/2527837
+>       From: README.md
+>       Status: 403
+>       Message: Forbidden
+>   
+  >   Found the following (possibly) invalid DOIs:
+  >     DOI: 10.2307/2527837
+>       From: DESCRIPTION
+>       Status: Forbidden
+>       Message: 403
+
+### Test environments
+* local Windows 10 Pro v19042.1052, R-release (R 4.1.0) & R-devel (R 4.2.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 4.1.0) & R-devel (R 4.2.0 Pre-release).
+* win-builder, R-release (R 4.1.0) & R-devel (R 4.2.0 Pre-release).
+* rhub:solaris-x86-patched - i386-pc-solaris2.10 (32-bit), R-release (R 4.1.0).
+* rhub:solaris-x86-patched-ods - i386-pc-solaris2.10 (32-bit), R-release (R 4.1.0).
+* rhub:macos-highsierra-release-cran - x86_64-apple-darwin17.0 (64-bit), R-release (R 4.1.0).
+
+# Version 0.1.4 - First submission
+
+* Fixed `cairo_pdf` unconditional use.
+* Fixed issue with vignette in Solaris build.
+* Tests show the following invalid doi/url which is for an article hosted in JSTOR. The doi is working on multiple browsers and networks on my end. Kindly advise.
+>   Found the following (possibly) invalid URLs:
+>     URL: https://doi.org/10.2307/2527837
+>       From: README.md
+>       Status: 403
+>       Message: Forbidden
+>   
+>   Found the following (possibly) invalid DOIs:
+>     DOI: 10.2307/2527837
+>       From: DESCRIPTION
+>       Status: Forbidden
+>       Message: 403
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 4.0.4) & R-devel (R 4.1.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 4.0.4) & R-devel (R 4.1.0 Pre-release).
+* win-builder, R-release (R 4.0.4) & R-devel (R 4.1.0 Pre-release).
+* rhub:solaris-x86-patched - i386-pc-solaris2.10 (32-bit), R-release (R 4.0.3).
+* rhub:solaris-x86-patched-ods - i386-pc-solaris2.10 (32-bit), R-release (R 4.0.3).
+* rhub:macos-highsierra-release-cran - x86_64-apple-darwin17.0 (64-bit), R-release (R 4.0.3).
+
+# Version 0.1.3 - Second submission
+
+* Reverted to using system certificates instead of RCurl ones for fetching and displaying version history as suggested by Prof. Brian Ripley (ripley@stats.ox.ac.uk).
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+* win-builder, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+
+### R CMD check results 
+* There were no ERRORs or WARNINGs.
+* Regarding (possibly) invalid URLs/ DOIs found:
+      URL: https://doi.org/10.2307/2527837
+      From: README.md
+      Status: 403
+      Message: Forbidden
+
+      DOI: 10.2307/2527837
+      From: DESCRIPTION
+      Status: Forbidden
+      Message: 403
+	  
+  + These seem to be false positives due to some sort of redirection as they are opening in browser. Kindly advise.
+
+# Version 0.1.3 - First submission
+
+* Reverted to using system certificates instead of RCurl ones for fetching and displaying version history as suggested by Prof. Brian Ripley (ripley@stats.ox.ac.uk).
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+* win-builder, R-release (R 4.0.2) & R-devel (R 4.1.0 Pre-release).
+
+### R CMD check results 
+* There were no ERRORs or WARNINGs.
+* Regarding (possibly) invalid URLs/ DOIs found:
+      URL: https://doi.org/10.2307/2527837
+      From: README.md
+      Status: 403
+      Message: Forbidden
+
+      DOI: 10.2307/2527837
+      From: DESCRIPTION
+      Status: Forbidden
+      Message: 403
+	  
+  + These seem to be false positives due to some sort of redirection as they are opening in browser. Kindly advise.
+
+# Version 0.1.2 - Second submission
+
+* Fixed compatability issues with updated implementation of `unit` function/class in `grid` package.
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+* win-builder, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs, NOTES or WARNINGs.
+
+# Version 0.1.2 - First submission
+
+* Fixed compatability issues with updated implementation of `unit` function/class in `grid` package.
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+* win-builder, R-release (R 3.6.3) & R-devel (R 4.0.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs, NOTES or WARNINGs.
+
+# Version 0.1.1 - Second submission
+
+* Changed `emmeans::cld` to `multcomp::cld` to account for the changes in `emmeans` 1.3.5.
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+* win-builder, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs or WARNINGs.
+* On NOTE specifying that the DOI (10.2307/2527837) and corresponding URL (https://doi.org/10.2307/2527837) in `Readme.md` and DESCRIPTION as being invalid. The link is accessible, so this NOTE is false and can be safely ignored.
+
+# Version 0.1.1 - First submission
+
+* Changed `emmeans::cld` to `multcomp::cld` to account for the changes in `emmeans` 1.3.5.
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+* win-builder, R-release (R 3.6.1) & R-devel (R 3.7.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs or WARNINGs.
+* On NOTE specifying that the DOI (10.2307/2527837) and corresponding URL (https://doi.org/10.2307/2527837) in `Readme.md` and DESCRIPTION as being invalid. The link is accessible, so this NOTE is false and can be safely ignored.
+
+# Version 0.1.0 - Third submission
+
+* \dontrun{} wrap in examples converted to \donttest{}. 
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.5.1) & R-devel (R 3.6.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.5.1) & R-devel (R 3.6.0 Pre-release).
+* win-builder, R-release (R 3.5.1) & R-devel (R 3.6.0 Pre-release).
+
+# Version 0.1.0 - Second submission
+
+* Added reference to augmented randomised complete block design in the 'Description' field of the DESCRIPTION file.
+* Fixed functions that were writing to user's home filespace by writing to `tempdir()`.
+* As examples take more than 5 seconds per Rd file, the \dontrun{} wrap is retained.
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+* win-builder, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs, NOTES or WARNINGs.
+
+# Version 0.1.0 - First submission
+
+### Test environments
+* local Windows 10 Home v1803, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+* local Ubuntu 16.04, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+* win-builder, R-release (R 3.5.0) & R-devel (R 3.6.0 Pre-release).
+
+### R CMD check results
+* There were no ERRORs, NOTES or WARNINGs.
+