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Add cmd line switch for implementation in DBSCAN example
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aprokop committed Apr 28, 2021
1 parent 5bdf418 commit 1d518c9
Showing 1 changed file with 24 additions and 9 deletions.
33 changes: 24 additions & 9 deletions examples/dbscan/dbscan.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -320,22 +320,24 @@ int main(int argc, char *argv[])
int max_num_points;
int num_samples;
std::string filename_labels;
std::string implementation;

bpo::options_description desc("Allowed options");
// clang-format off
desc.add_options()
( "help", "help message" )
( "filename", bpo::value<std::string>(&filename), "filename containing data" )
( "binary", bpo::bool_switch(&binary)->default_value(false), "binary file indicator")
( "max-num-points", bpo::value<int>(&max_num_points)->default_value(-1), "max number of points to read in")
( "eps", bpo::value<float>(&eps), "DBSCAN eps" )
( "cluster-min-size", bpo::value<int>(&cluster_min_size)->default_value(2), "minimum cluster size")
( "core-min-size", bpo::value<int>(&core_min_size)->default_value(2), "DBSCAN min_pts")
( "verify", bpo::bool_switch(&verify)->default_value(false), "verify connected components")
( "samples", bpo::value<int>(&num_samples)->default_value(-1), "number of samples" )
( "eps", bpo::value<float>(&eps), "DBSCAN eps" )
( "filename", bpo::value<std::string>(&filename), "filename containing data" )
( "impl", bpo::value<std::string>(&implementation)->default_value("fdbscan"), "implementation (\"fdbscan\" or \"fdbscan-densebox\")")
( "labels", bpo::value<std::string>(&filename_labels)->default_value(""), "clutering results output" )
( "print-dbscan-timers", bpo::bool_switch(&print_dbscan_timers)->default_value(false), "print dbscan timers")
( "max-num-points", bpo::value<int>(&max_num_points)->default_value(-1), "max number of points to read in")
( "output-sizes-and-centers", bpo::bool_switch(&print_sizes_centers)->default_value(false), "print cluster sizes and centers")
( "print-dbscan-timers", bpo::bool_switch(&print_dbscan_timers)->default_value(false), "print dbscan timers")
( "samples", bpo::value<int>(&num_samples)->default_value(-1), "number of samples" )
( "verify", bpo::bool_switch(&verify)->default_value(false), "verify connected components")
;
// clang-format on
bpo::variables_map vm;
Expand All @@ -348,13 +350,25 @@ int main(int argc, char *argv[])
return 1;
}

if (implementation != "fdbscan" && implementation != "fdbscan-densebox")
{
std::cout << "Unknown implementation: \"" << implementation
<< "\". Valid values are [\"fdbscan\", \"fdbscan-densebox\"]."
<< std::endl;
return 2;
}
auto impl = (implementation == "fdbscan"
? ArborX::DBSCAN::Implementation::FDBSCAN
: ArborX::DBSCAN::Implementation::FDBSCAN_DenseBox);

// Print out the runtime parameters
printf("eps : %f\n", eps);
printf("minpts : %d\n", core_min_size);
printf("cluster min size : %d\n", cluster_min_size);
printf("filename : %s [%s, max_pts = %d]\n", filename.c_str(),
(binary ? "binary" : "text"), max_num_points);
printf("filename [labels] : %s [binary]\n", filename_labels.c_str());
printf("implementation : %s\n", implementation.c_str());
printf("samples : %d\n", num_samples);
printf("verify : %s\n", (verify ? "true" : "false"));
printf("print timers : %s\n", (print_dbscan_timers ? "true" : "false"));
Expand Down Expand Up @@ -386,9 +400,10 @@ int main(int argc, char *argv[])

timer_start(timer_total);

auto labels = ArborX::dbscan(
exec_space, primitives, eps, core_min_size,
ArborX::DBSCAN::Parameters().setPrintTimers(print_dbscan_timers));
auto labels = ArborX::dbscan(exec_space, primitives, eps, core_min_size,
ArborX::DBSCAN::Parameters()
.setPrintTimers(print_dbscan_timers)
.setImplementation(impl));

timer_start(timer);
Kokkos::View<int *, MemorySpace> cluster_indices("Testing::cluster_indices",
Expand Down

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