kilombo

Aggregation of NCBI searches.

Given a NCBI text query it gathers all related study IDs with the GSEs and SRPs.

How to run it

Get installed poetry and then:

    poetry install
    uvicorn kilombo.main:app

Server will listen in port 8000. You can check the functionality with this example query:

    curl --location 'localhost:8000/query-study-hierarchy?keyword=stroke%20AND%20single%20cell%20rna%20seq%20AND%20musculus'