Collect NIH NCBI SRA 🧬 metadata of several GEO studies in one search 🔮
Ask for credentials by mail ✉️ to marta.arcones@gmail.com and then use the API directly 👉 here
📢 Best Effort Design
NCBI data is sometimes not consistent, therefore, sra-collector implements best effort approach, fetching all possible SRA metadata but not giving any guarantees.
- Cloud Native
- Infrastructure As Code
- Asynchronous Communication
- Fail Fast
- Immutable Infrastructure
- Test Driven Development
- Mocking
- Convention Over Configuration
- Encryption
- Passwords Secure Storage
- Continuous Integration & Deployment
- Git Ops
- Don't Repeat Yourself
- Single responsibility principle
- Observability