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@arjunrajlaboratory

Arjun Raj's systems biology lab

Popular repositories

  1. DeepTile DeepTile Public

    Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

    Python 9

  2. ProbeDesign ProbeDesign Public

    MATLAB 4 1

  3. rajlabimagetools rajlabimagetools Public

    MATLAB 2 4

  4. organoids2 organoids2 Public

    MATLAB 1

  5. atac-seq_pipeline_paired-end atac-seq_pipeline_paired-end Public

    Slightly customized version of the ENCODE ATAC-seq v1 pipeline. Made to run on Penn's high performance cluster (PMACS). The ENCODE ATAC-Seq pipeline v1 specifications are listed in this google doc:…

    Python 1

  6. NetworkModeling_RareCellVariability_Code NetworkModeling_RareCellVariability_Code Public

    Code corresponding to paper 'Gene networks with transcriptional bursting recapitulate rare transient coordinated high expression states in cancer'

    MATLAB 1

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