The RBiotools package provides support for Basic Comparative Microbial Genomics. It supports microbial comparative genomics with functions parameterized by a list of Gen-Bank accession numbers and R implementations of Prodigal, RNAmmer, and Linclust.

Current Version: 0.5.3 Date 2022-03-18

Author: Michael R. Leuze Maintainer: Michael R. Leuze RBiotools@gmail.com

License: GPL (>= 2) | Artistic-2.0

Imports: ape, Biostrings, data.table, fmsb, ggplot2, gplots, graphics, grid, grImport, gridExtra, methods, msa, pheatmap, Rcpp, RCurl, rentrez, seqinr, stats, stringr, utils

LinkingTo: Rcpp NeedsCompilation: yes

Please see the manual for more details. (permalink: https://github.com/nsf-dart/RBioTools/blob/91a28f0bc261617280a63ef0dbd4b712cbfb0200/getting-started.R)