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Scripts to run analyses for the manuscript: "Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease"

main.R is the main runner script that goes through all the scripts in a sequence.

Name		Name	Last commit message	Last commit date
Latest commit History 508 Commits
functions		functions
.gitignore		.gitignore
README.md		README.md
ahba_entrez2ensembl.R		ahba_entrez2ensembl.R
boxplot_braak.R		boxplot_braak.R
braakStageSamples.R		braakStageSamples.R
braakgenes.R		braakgenes.R
braaklabel_cor.R		braaklabel_cor.R
coexpr_modules.R		coexpr_modules.R
diff_expr_GTEX.R		diff_expr_GTEX.R
diff_expr_UKBEC.R		diff_expr_UKBEC.R
diff_expr_ahba.R		diff_expr_ahba.R
diffexpr_PD_RNAseq.R		diffexpr_PD_RNAseq.R
diffexpr_PD_microarray.R		diffexpr_PD_microarray.R
eigengene_cor.R		eigengene_cor.R
forestplot.R		forestplot.R
gene_coexpr.R		gene_coexpr.R
lineplot_braak.R		lineplot_braak.R
main.R		main.R
module_enrichment.R		module_enrichment.R
pd_braak.Rproj		pd_braak.Rproj
pd_implicated_genes.R		pd_implicated_genes.R
probe2gene_AHBA.R		probe2gene_AHBA.R
probe2genes_PD_microarray.R		probe2genes_PD_microarray.R
psea.R		psea.R
soft_thresholding.R		soft_thresholding.R

arlinkeo/pd_braak