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Version 0.99.1
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arnesmits committed Aug 10, 2017
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Package: DEP
Title: Differential Enrichment analysis of Proteomics data
Version: 0.99.0
Version: 0.99.1
Authors@R: c(
person("Arne", "Smits", email = "arne.smits@embl.de", role = "cre"),
person("Wolfgang", "Huber", role = "aut"))
person("Wolfgang", "Huber", email = "wolfgang.huber@embl.de", role = "aut"))
Description: This package provides an integrated analysis workflow for robust and reproducible analysis of mass spectrometry proteomics data for differential protein expression or differential enrichment.
It requires tabular input (e.g. txt files) as generated by quantitative analysis softwares of raw mass spectrometry data, such as MaxQuant or IsobarQuant.
Functions are provided for data preparation, filtering, variance normalization and imputation of missing values, as well as statistical testing of differentially enriched / expressed proteins.
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