new examples

R/plot_functions_explore.R

@@ -39,7 +39,7 @@
 #' dep <- add_rejections(diff, alpha = 0.05, lfc = 1)
 #'
 #' plot_pca(dep)
-#' plot_pca(dep, indicate = "")
+#' plot_pca(dep, indicate = "condition")
 #' @export
 plot_pca <- function(dep, x = 1, y = 2, indicate = c("condition", "replicate"),
                      label = FALSE, n = 500, point_size = 6, label_size = 3) {
@@ -173,6 +173,8 @@ plot_pca <- function(dep, x = 1, y = 2, indicate = c("condition", "replicate"),
 #' Sets the color panel (from \code{\link[RColorBrewer]{brewer.pal}}).
 #' @param pal_rev Logical(1),
 #' Whether or not to invert the color palette.
+#' @param font_size Integer(1),
+#' Sets the size of the labels.
 #' @param ... Additional arguments for Heatmap function as depicted in
 #' \code{\link[ComplexHeatmap]{Heatmap}}
 #' @return A heatmap plot (generated by \code{\link[ComplexHeatmap]{Heatmap}})
@@ -193,7 +195,7 @@ plot_pca <- function(dep, x = 1, y = 2, indicate = c("condition", "replicate"),
 #' diff <- test_diff(imputed, 'Ctrl', 'control')
 #' dep <- add_rejections(diff, alpha = 0.05, lfc = 1)
 #'
-#' plot_corr(dep)
+#' plot_cor(dep)
 #' @export
 plot_cor <- function(dep, significant = TRUE, lower = -1, upper = 1,
                       pal = "PRGn", pal_rev = FALSE, font_size = 12, ...) {