support for bedtools existing somewhere other than PATH

arq5x · Mar 30, 2012 · 65ceb1f · 65ceb1f
1 parent 64ed292
commit 65ceb1f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/makeBashScripts.py b/scripts/makeBashScripts.py
@@ -53,7 +53,7 @@ def main():
 
         script = open('bin/'  + old, 'w')
         script.write("#!/bin/sh\n")
-        script.write("bedtools " + new + " \"$@\"\n")
+        script.write("${0%/*}/bedtools " + new + " \"$@\"\n")
         script.close()
 
 if __name__ == "__main__":