Merge branch 'master' of github.com:arq5x/gemini

arq5x · Jun 15, 2015 · 22f8e6c · 22f8e6c
2 parents 0c46ad8 + 6157c8e
commit 22f8e6c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/gemini/gemini_load_chunk.py b/gemini/gemini_load_chunk.py
@@ -38,7 +38,7 @@ def get_phred_lik(gt_phred_likelihoods, dtype=np.int32, empty_val=-1):
     empty_line = [empty_val] * 3
     for row in gt_phred_likelihoods:
         # we only try to use the correct PL's if it already has size 3
-        if row is not None and len(row) == 3:
+        if row is not None and isinstance(row, (list, tuple)) and len(row) == 3:
             out.append([min(m, int(v)) if v is not None else empty_val for v in row])
             all_empty = False
         else: