verion 0.13.1

arq5x · Apr 9, 2015 · 714f4d7 · 714f4d7
1 parent 054db01
commit 714f4d7
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Showing 6 changed files with 57 additions and 4 deletions.
diff --git a/docs/content/history.rst b/docs/content/history.rst
@@ -8,7 +8,8 @@ Release History
 2. Standardize the output from the built-in tools into a common, BED+ format.
 3. Update parsing for newer snpEff version
 4. Improve and tighten up the database loading.
-5. Include preprocess script to support varscan, platypus (https://gist.github.com/brentp/4db670df147cbd5a2b32)
+5. Tools for X-linked inheritance.
+6. Include preprocess script to support varscan, platypus (https://gist.github.com/brentp/4db670df147cbd5a2b32)
 
 0.13.0 (2015-Apr-08)
 =======================================

diff --git a/gemini/version.py b/gemini/version.py
@@ -1 +1 @@
-__version__="0.13.0"
+__version__="0.13.1"
diff --git a/requirements.txt b/requirements.txt
@@ -14,4 +14,4 @@ pandas>=0.11.0
 openpyxl>=1.6.1,<2.0.0
 scipy>=0.12.0
 Unidecode>=0.04.14
-gemini>=0.13.0
+gemini>=0.13.1
diff --git a/versioning/0.13.0/requirements_pip.txt b/versioning/0.13.0/requirements_pip.txt
@@ -14,4 +14,4 @@ pandas==0.14.0
 openpyxl==1.8.6
 scipy==0.14.0
 Unidecode==0.04.16
-gemini==0.13.0
+gemini>=0.13.0
diff --git a/versioning/0.13.1/requirements_conda.txt b/versioning/0.13.1/requirements_conda.txt
@@ -0,0 +1,35 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+bx-python=0.7.2=np18py27_1
+conda=3.5.5=py27_0
+cython=0.20.1=py27_0
+dateutil=2.1=py27_2
+ipython=2.1.0=py27_2
+jinja2=2.7.2=py27_0
+libsodium=0.4.5=0
+markupsafe=0.18=py27_0
+nose=1.3.3=py27_0
+numpy=1.8.1=py27_0
+openssl=1.0.1h=0
+pandas=0.14.0=np18py27_0
+pip=1.5.6=py27_0
+pycosat=0.6.1=py27_0
+pycrypto=2.6.1=py27_0
+pyparsing=2.0.1=py27_0
+pysam=0.8.0=py27_0
+python=2.7.8=0
+pytz=2014.4=py27_0
+pyyaml=3.11=py27_0
+pyzmq=14.3.0=py27_0
+readline=6.2=2
+requests=2.3.0=py27_0
+scipy=0.14.0=np18py27_0
+setuptools=3.6=py27_0
+six=1.7.3=py27_0
+sqlite=3.8.4.1=0
+system=5.8=1
+tk=8.5.15=0
+yaml=0.1.4=0
+zeromq=4.0.4=0
+zlib=1.2.7=0
diff --git a/versioning/0.13.1/requirements_pip.txt b/versioning/0.13.1/requirements_pip.txt
@@ -0,0 +1,17 @@
+numpy==1.8.1
+pyparsing==1.5.7
+pysam==0.8.0
+cyvcf==0.1.14
+PyYAML==3.11
+pybedtools==0.6.6
+jinja2==2.7.3
+python-graph-core==1.8.2
+python-graph-dot==1.8.2
+bottle==0.12.7
+ipython-cluster-helper==0.3.0
+bx-python==0.7.1
+pandas==0.14.0
+openpyxl==1.8.6
+scipy==0.14.0
+Unidecode==0.04.16
+gemini>=0.13.1