added mocks to sphinx conf.py

sphinx_doc/build/html/_modules/index.html

@@ -194,7 +194,6 @@ <h1>All modules for which code is available</h1>
 <li><a href="qubiter/device_specific/Qubiter_to_RigettiPyQuil.html">qubiter.device_specific.Qubiter_to_RigettiPyQuil</a></li>
 <li><a href="qubiter/device_specific/RigettiTools.html">qubiter.device_specific.RigettiTools</a></li>
 <li><a href="qubiter/device_specific/utilities_ds.html">qubiter.device_specific.utilities_ds</a></li>
-<li><a href="qubiter/io_folder/qbtr2penny_test2_fun_defs.html">qubiter.io_folder.qbtr2penny_test2_fun_defs</a></li>
 <li><a href="qubiter/latex_tools/AsciiPic_to_Latex.html">qubiter.latex_tools.AsciiPic_to_Latex</a></li>
 <li><a href="qubiter/quantum_CSD_compiler/CS_Decomp.html">qubiter.quantum_CSD_compiler.CS_Decomp</a></li>
 <li><a href="qubiter/quantum_CSD_compiler/DiagUnitaryExpander.html">qubiter.quantum_CSD_compiler.DiagUnitaryExpander</a></li>

sphinx_doc/build/html/_modules/qubiter/adv_applications/setup_autograd.html

@@ -292,7 +292,7 @@ <h1>Source code for qubiter.adv_applications.setup_autograd</h1><div class="high
     <span class="k">return</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">u2r</span><span class="p">,</span> <span class="n">dwrt</span><span class="p">)(</span><span class="o">*</span><span class="n">tlist</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span><span class="o">*</span><span class="n">jacobian</span><span class="p">(</span><span class="n">u2i</span><span class="p">,</span> <span class="n">dwrt</span><span class="p">)(</span><span class="o">*</span><span class="n">tlist</span><span class="p">)</span></div>
 
 
-<span class="nd">@primitive</span>
+<div class="viewcode-block" id="pu2r"><a class="viewcode-back" href="../../../qubiter.adv_applications.setup_autograd.html#qubiter.adv_applications.setup_autograd.pu2r">[docs]</a><span class="nd">@primitive</span>
 <span class="k">def</span> <span class="nf">pu2r</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Returns real part of u2, and registers it as being primitive.</span>
@@ -312,10 +312,10 @@ <h1>Source code for qubiter.adv_applications.setup_autograd</h1><div class="high
 <span class="sd">        shape=(2,2)</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">u2_alt</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">))</span>
+    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">u2_alt</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">))</span></div>
 
 
-<span class="nd">@primitive</span>
+<div class="viewcode-block" id="pu2i"><a class="viewcode-back" href="../../../qubiter.adv_applications.setup_autograd.html#qubiter.adv_applications.setup_autograd.pu2i">[docs]</a><span class="nd">@primitive</span>
 <span class="k">def</span> <span class="nf">pu2i</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Returns imaginary part of u2, and registers it as being primitive.</span>
@@ -335,7 +335,7 @@ <h1>Source code for qubiter.adv_applications.setup_autograd</h1><div class="high
 <span class="sd">        shape=(2,2)</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">u2_alt</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">))</span>
+    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">u2_alt</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">))</span></div>
 
 
 <div class="viewcode-block" id="pu2"><a class="viewcode-back" href="../../../qubiter.adv_applications.setup_autograd.html#qubiter.adv_applications.setup_autograd.pu2">[docs]</a><span class="k">def</span> <span class="nf">pu2</span><span class="p">(</span><span class="o">*</span><span class="n">tlist</span><span class="p">):</span>

sphinx_doc/build/html/genindex.html

@@ -224,8 +224,6 @@ <h2 id="_">_</h2>
         <li><a href="qubiter.SEO_writer.html#qubiter.SEO_writer.SEO_writer.__init__">(qubiter.SEO_writer.SEO_writer method)</a>
 </li>
         <li><a href="qubiter.StateVec.html#qubiter.StateVec.StateVec.__init__">(qubiter.StateVec.StateVec method)</a>
-</li>
-        <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil.__init__">(qubiter.adv_applications.MeanHamil.MeanHamil method)</a>
 </li>
         <li><a href="qubiter.adv_applications.MeanHamilMinimizer.html#qubiter.adv_applications.MeanHamilMinimizer.MeanHamilMinimizer.__init__">(qubiter.adv_applications.MeanHamilMinimizer.MeanHamilMinimizer method)</a>
 </li>
@@ -351,10 +349,6 @@ <h2 id="C">C</h2>
       <li><a href="qubiter.CGateExpander.html#qubiter.CGateExpander.CGateExpander">CGateExpander (class in qubiter.CGateExpander)</a>
 </li>
       <li><a href="qubiter.CGateSEO_writer.html#qubiter.CGateSEO_writer.CGateSEO_writer">CGateSEO_writer (class in qubiter.CGateSEO_writer)</a>
-</li>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil.check_hamil_is_herm">check_hamil_is_herm() (qubiter.adv_applications.MeanHamil.MeanHamil static method)</a>
-</li>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil.check_hamil_is_in_range">check_hamil_is_in_range() (qubiter.adv_applications.MeanHamil.MeanHamil static method)</a>
 </li>
       <li><a href="qubiter.device_specific.ChipCouplingsFitter.html#qubiter.device_specific.ChipCouplingsFitter.ChipCouplingsFitter">ChipCouplingsFitter (class in qubiter.device_specific.ChipCouplingsFitter)</a>
 </li>
@@ -370,10 +364,10 @@ <h2 id="C">C</h2>
 </li>
       <li><a href="qubiter.OneBitGates.html#qubiter.OneBitGates.OneBitGates.const_dict">const_dict() (qubiter.OneBitGates.OneBitGates static method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="qubiter.Controls.html#qubiter.Controls.Controls">Controls (class in qubiter.Controls)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="qubiter.SEO_simulator.html#qubiter.SEO_simulator.SEO_simulator.convert_tensors_to_numpy">convert_tensors_to_numpy() (qubiter.SEO_simulator.SEO_simulator method)</a>
 
       <ul>
@@ -607,20 +601,18 @@ <h2 id="G">G</h2>
       <li><a href="qubiter.PlaceholderManager.html#qubiter.PlaceholderManager.PlaceholderManager.get_leg_var_scale_fac">get_leg_var_scale_fac() (qubiter.PlaceholderManager.PlaceholderManager static method)</a>
 </li>
       <li><a href="qubiter.PlaceholderManager.html#qubiter.PlaceholderManager.PlaceholderManager.get_leg_var_sign">get_leg_var_sign() (qubiter.PlaceholderManager.PlaceholderManager static method)</a>
-</li>
-      <li><a href="qubiter.PlaceholderManager.html#qubiter.PlaceholderManager.PlaceholderManager.get_leg_var_var_nums">get_leg_var_var_nums() (qubiter.PlaceholderManager.PlaceholderManager static method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="qubiter.PlaceholderManager.html#qubiter.PlaceholderManager.PlaceholderManager.get_leg_var_var_nums">get_leg_var_var_nums() (qubiter.PlaceholderManager.PlaceholderManager static method)</a>
+</li>
       <li><a href="qubiter.SEO_reader.html#qubiter.SEO_reader.SEO_reader.get_log_file_path">get_log_file_path() (qubiter.SEO_reader.SEO_reader method)</a>
 </li>
       <li><a href="qubiter.OneBitGates.html#qubiter.OneBitGates.OneBitGates.get_mat">get_mat() (qubiter.OneBitGates.OneBitGates static method)</a>
 </li>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil.get_mean_val">get_mean_val() (qubiter.adv_applications.MeanHamil.MeanHamil method)</a>
+      <li><a href="qubiter.adv_applications.MeanHamil_native.html#qubiter.adv_applications.MeanHamil_native.MeanHamil_native.get_mean_val">get_mean_val() (qubiter.adv_applications.MeanHamil_native.MeanHamil_native method)</a>
 
       <ul>
-        <li><a href="qubiter.adv_applications.MeanHamil_native.html#qubiter.adv_applications.MeanHamil_native.MeanHamil_native.get_mean_val">(qubiter.adv_applications.MeanHamil_native.MeanHamil_native method)</a>
-</li>
         <li><a href="qubiter.adv_applications.MeanHamil_rigetti.html#qubiter.adv_applications.MeanHamil_rigetti.MeanHamil_rigetti.get_mean_val">(qubiter.adv_applications.MeanHamil_rigetti.MeanHamil_rigetti method)</a>
 </li>
         <li><a href="qubiter.adv_applications.StairsAllDeriv_native.html#qubiter.adv_applications.StairsAllDeriv_native.StairsAllDeriv_native.get_mean_val">(qubiter.adv_applications.StairsAllDeriv_native.StairsAllDeriv_native method)</a>
@@ -659,8 +651,6 @@ <h2 id="G">G</h2>
       <li><a href="qubiter.adv_applications.StairsDerivCkt_writer.html#qubiter.adv_applications.StairsDerivCkt_writer.StairsDerivCkt_writer.get_rads_list_of_dpart">get_rads_list_of_dpart() (qubiter.adv_applications.StairsDerivCkt_writer.StairsDerivCkt_writer static method)</a>
 </li>
       <li><a href="qubiter.StateVec.html#qubiter.StateVec.StateVec.get_random_st_vec">get_random_st_vec() (qubiter.StateVec.StateVec static method)</a>
-</li>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil.get_real_vec">get_real_vec() (qubiter.adv_applications.MeanHamil.MeanHamil method)</a>
 </li>
       <li><a href="qubiter.Plotter.html#qubiter.Plotter.Plotter.get_st_vec_df">get_st_vec_df() (qubiter.Plotter.Plotter static method)</a>
 </li>
@@ -810,8 +800,6 @@ <h2 id="M">M</h2>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#qubiter.adv_applications.MeanHamil.MeanHamil">MeanHamil (class in qubiter.adv_applications.MeanHamil)</a>
-</li>
       <li><a href="qubiter.adv_applications.MeanHamil_native.html#qubiter.adv_applications.MeanHamil_native.MeanHamil_native">MeanHamil_native (class in qubiter.adv_applications.MeanHamil_native)</a>
 </li>
       <li><a href="qubiter.adv_applications.MeanHamil_rigetti.html#qubiter.adv_applications.MeanHamil_rigetti.MeanHamil_rigetti">MeanHamil_rigetti (class in qubiter.adv_applications.MeanHamil_rigetti)</a>
@@ -931,8 +919,6 @@ <h2 id="Q">Q</h2>
       <li><a href="qubiter.adv_applications.html#module-qubiter.adv_applications">qubiter.adv_applications (module)</a>
 </li>
       <li><a href="qubiter.adv_applications.CostMinimizer.html#module-qubiter.adv_applications.CostMinimizer">qubiter.adv_applications.CostMinimizer (module)</a>
-</li>
-      <li><a href="qubiter.adv_applications.MeanHamil.html#module-qubiter.adv_applications.MeanHamil">qubiter.adv_applications.MeanHamil (module)</a>
 </li>
       <li><a href="qubiter.adv_applications.MeanHamil_native.html#module-qubiter.adv_applications.MeanHamil_native">qubiter.adv_applications.MeanHamil_native (module)</a>
 </li>