trouble installing with Julia 1.6.2

[MooersLab]

The command below from the repo Readme.md is not working with Julia 1.6.2:

PYTHON="" julia -e 'using Pkg; Pkg.add("PyCall"); Pkg.build("PyCall"); Pkg.add("ArviZ");'

julia> using ArviZ
[ Info: Precompiling ArviZ [131c737c-5715-5e2e-ad31-c244f01c1dc7]
INTEL MKL ERROR: dlopen(/Users/blaine/.julia/conda/3/lib/libmkl_intel_thread.dylib, 9): Library not loaded: @rpath/libiomp5.dylib
  Referenced from: /Users/blaine/.julia/conda/3/lib/libmkl_intel_thread.dylib
  Reason: image not found.
Intel MKL FATAL ERROR: Cannot load libmkl_intel_thread.dylib.
ERROR: Failed to precompile ArviZ [131c737c-5715-5e2e-ad31-c244f01c1dc7] to /Users/blaine/.julia/compiled/v1.6/ArviZ/jl_Ps8GJt.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY, ignore_loaded_modules::Bool)
   @ Base ./loading.jl:1385
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1329
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1043
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:936
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:923

[sethaxen]

This is an issue that sometimes arises due to PyCall.jl (or perhaps a Python dependency). Can you try the solution in JuliaPy/PyPlot.jl#315 (comment), and if that doesn't work, the one in JuliaPy/PyPlot.jl#315 (comment) and then let me know if one worked which one?

[MooersLab]

The first solution solved my problem! Thank you!! Sorry about the first e-mail being blank. I still forget to enter :w when using firenvim in textboxes on webpages.

…

On Mon, Jul 26, 2021 at 6:28 PM Blaine Mooers ***@***.***> wrote: On Mon, Jul 26, 2021 at 4:42 PM Seth Axen ***@***.***> wrote: > This is an issue that sometimes arises due to PyCall.jl (or perhaps a > Python dependency). Can you try the solution in JuliaPy/PyPlot.jl#315 > (comment) > <JuliaPy/PyPlot.jl#315 (comment)>, > and if that doesn't work, the one in JuliaPy/PyPlot.jl#315 (comment) > <JuliaPy/PyPlot.jl#315 (comment)> > and then let me know if one worked which one? > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#137 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADTZEC4OCYXOI5BPODNSX7TTZXJELANCNFSM5BARX6HQ> > . > -- Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center Rm. 466 975 NE 10th Street <https://maps.google.com/?q=975+NE+10th+Street&entry=gmail&source=g>, BRC 466 Oklahoma City, OK 73104-5419 office: (405) 271-8300 lab: (405) 271-8313 Faculty webpage <http://basicsciences.ouhsc.edu/biochemmolbiol/Faculty/bio_details/TabId/11753/ArtMID/30702/ArticleID/6430/Mooers-Blaine-HM-PhD.aspx> X-ray lab (LBSF) <http://research.ouhsc.edu/CoreFacilities/LaboratoryofBiomolecularStructureandFunction.aspx> SSRL UEC <https://www-ssrl.slac.stanford.edu/content/about-ssrl/advisory-panels/ssrl-users-organization/members/ssrluo-2016-executive-committee-members> SSURF EasyPyMOL <https://github.com/MooersLab/EasyPyMOL> Molecular Graphics <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/moleculargraphicslinks.html> <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/MolecularGraphicsLinks.html> Small Angle Scattering <http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-scattering-links-27aug2014.html?sfvrsn=0> office: (405) 271-8300 lab: (405) 271-8313 e-mail: ***@***.*** (or ***@***.***)

-- Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center Rm. 466 975 NE 10th Street <https://maps.google.com/?q=975+NE+10th+Street&entry=gmail&source=g>, BRC 466 Oklahoma City, OK 73104-5419 office: (405) 271-8300 lab: (405) 271-8313 Faculty webpage <http://basicsciences.ouhsc.edu/biochemmolbiol/Faculty/bio_details/TabId/11753/ArtMID/30702/ArticleID/6430/Mooers-Blaine-HM-PhD.aspx> X-ray lab (LBSF) <http://research.ouhsc.edu/CoreFacilities/LaboratoryofBiomolecularStructureandFunction.aspx> SSRL UEC <https://www-ssrl.slac.stanford.edu/content/about-ssrl/advisory-panels/ssrl-users-organization/members/ssrluo-2016-executive-committee-members> SSURF EasyPyMOL <https://github.com/MooersLab/EasyPyMOL> Molecular Graphics <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/moleculargraphicslinks.html> <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/MolecularGraphicsLinks.html> Small Angle Scattering <http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-scattering-links-27aug2014.html?sfvrsn=0> office: (405) 271-8300 lab: (405) 271-8313 e-mail: ***@***.*** (or ***@***.***)

[sethaxen]

Glad to hear it! I think I've run into this issue randomly before as well, so I'll add to the docs a warning for future users.