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Make sure that ArviZ.jl is compatible with arviz v0.8 #75

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sethaxen opened this issue May 25, 2020 · 2 comments · Fixed by #81
Closed

Make sure that ArviZ.jl is compatible with arviz v0.8 #75

sethaxen opened this issue May 25, 2020 · 2 comments · Fixed by #81

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@sethaxen
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The changelog is here: https://github.com/arviz-devs/arviz/blob/master/CHANGELOG.md#v080-2020-may-23

In addition to making sure tests pass, also make sure that new features in arviz that have ArviZ.jl analogs also work here.

@sethaxen
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sethaxen commented Jul 31, 2020

Going through the changelog, these appear to be things we need to look at:

  • Allow xarray.Dataarray input for plots.(#1120)
  • Revamped the hpd function to make it work with mutidimensional arrays, InferenceData and xarray objects (#1117)
  • Add out-of-sample groups (predictions and predictions_constant_data) to from_dict (#1125)
  • Add out-of-sample groups (predictions and predictions_constant_data) and constant_data group to pyro and numpyro translation (#1090, #1125)
  • Integrate jointplot into pairplot, add point-estimate and overlay of plot kinds (#1079)
  • Add warmup groups to InferenceData objects, initial support for PyStan (#1126) and PyMC3 (#1171)
  • hpd function deprecated in favor of hdi. credible_interval argument replaced by hdi_probthroughout with exception of plot_loo_pit (#1176)
  • plot_hpd function deprecated in favor of plot_hdi. (#1190)

@sethaxen
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sethaxen commented Aug 2, 2020

At this point, the only features we appear to be missing are support for saving warmup for MCMCChains .Chains and (maybe) NamedTuple inputs. But those aren't yet supported for all from_XXX methods in ArviZ, so I think this issue is indeed closed.

@sethaxen sethaxen closed this as completed Aug 2, 2020
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